Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00271 ATGGAGAACAACAACCAGCAAGCTCAGTCCTCCTCATACCCACCACAACCTCCATTTCACCATCTCCTGCAACAGCAGCATCAGCAACTCCAGATGTTTTGGACATATCAACGGCAGGAAATCGAACAAGTCAACGATTTCAAGAACCATCAGCTCCCCCTGGCCCGCATCAAGAAGATCATGAAAGCAGATGAGGATGTCCGCATGATTTCTGCCGAAGCCCCCATCTTATTCGCTAAGGCGTGCGAGCTCTTCATACTCGAGCTCACCATCAGATCATGGCTTCATGCCGAGGAGAACAAGCGTCGAACCCTTCAGAAGAACGACATTGCCGCGGCCATCACTCGTACCGATATTTTCGATTTCTTGGTTGATATTGTTCCGAGGGATGAGATCAAGGATGAAGGTGGGTTGGGGCTTGTGGGGGGTACTACTAGTGGGGTCCCTTATTATTACCCTCCGGTCGGGCAGACTGCACCGGGTGTTATGATGGGGCGACCAGCGTTGCCCGGGATGGATCCGGGGGTCTATGTTCATCAACCGTCGCAGGCTTGGCAGTCAGTGTGGCAAACGGACGATGGATCGTATGGGAGCGGCAGCGGTGGACAGGCTAATTTGGATGGGCAGGGGGCATGA 636 0.5346 MENNNQQAQSSSYPPQPPFHHLLQQQHQQLQMFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEGGLGLVGGTTSGVPYYYPPVGQTAPGVMMGRPALPGMDPGVYVHQPSQAWQSVWQTDDGSYGSGSGGQANLDGQGA* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00271 211 MobiDBLite consensus disorder prediction 1 20 - -
Eupl04g00271 211 MobiDBLite consensus disorder prediction 190 211 - -
Eupl04g00271 211 Pfam Core histone H2A/H2B/H3/H4 24 114 IPR007125 GO:0003677
Eupl04g00271 211 Gene3D Histone, subunit A 19 129 IPR009072 GO:0046982
Eupl04g00271 211 FunFam Nuclear transcription factor Y subunit gamma 20 129 - -
Eupl04g00271 211 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 147 - -
Eupl04g00271 211 SUPERFAMILY Histone-fold 4 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00271 Eupl-Chr4 4438882 4442361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00271 19 210 CCAAT-HAP5 Transcription Factor Family AT3G48590 80.488 6.01e-99 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Eupl04g00271 CBFD_NFYB_HMF 2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00271 - - vvi:100259532 340.117