Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00255 ATGGGTAGAGGAAGGGTTGAGTTGAAGAGGATCGAGAACAAAATCAACCGGCAAGTCACCTTCGCAAAACGTAGAAATGGCCTTTTGAAGAAAGCTTACGAGCTTTCTGTTCTTTGTGAGGCTGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTGTACGAGTTCTGCAGTAGCACCAGCATGTTCAAAACGCTTGAGAGGTATCAGAAGTGCAACTATGGTGCACCGGAAACAACTGTATCCACAAGGGAGCTCCAGGAGCAGAGTAGCCAGCAGGAGTATTTGAAACTTAAGGCACGAGTCGAGGCCCTACAACGATCCCAAAGGAATCTTCTGGGTGAGGATTTGGGACCCTTAAGCGGCAAGGAGCTTGAGTCACTTGAAAGACAGCTTGACATGTCACTGAAGCAGATCAGATCAACTCGGACCCAATACATGCTTGATCAGCTCACCGATCTTCAACGAAGAGAACAAGTGCTTAGCGAATCTAACAAGAACTTAAGAAGAAGGTTGGAGGAAGGTAGCCAAGCAAATCCACACCAATGGGACCTAAGTGCACACGGTGTGGGGTACGGTCGTCAGCAGCCTCAAGCACAGGGCGAAGGGTTCTACCATCCCTTAGAGTGCGAGCCCACGCTGCAAATCGGGTACCACCCTGATCAAATAACGGTTGCAGCACCTGGGCCAAGTGTTAATAATTACAATATGCCAGGATGGTTAGCATGA 732 0.4863 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCSSTSMFKTLERYQKCNYGAPETTVSTRELQEQSSQQEYLKLKARVEALQRSQRNLLGEDLGPLSGKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRREQVLSESNKNLRRRLEEGSQANPHQWDLSAHGVGYGRQQPQAQGEGFYHPLECEPTLQIGYHPDQITVAAPGPSVNNYNMPGWLA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00255 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Eupl04g00255 243 Coils Coil 89 109 - -
Eupl04g00255 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl04g00255 243 FunFam MADS-box transcription factor 7 13 98 - -
Eupl04g00255 243 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Eupl04g00255 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl04g00255 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl04g00255 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl04g00255 243 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Eupl04g00255 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Eupl04g00255 243 Coils Coil 152 172 - -
Eupl04g00255 243 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl04g00255 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Eupl04g00255 243 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Eupl04g00255 243 MobiDBLite consensus disorder prediction 173 200 - -
Eupl04g00255 243 Coils Coil 126 146 - -
Eupl04g00255 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Eupl04g00255 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00255 Eupl-Chr4 4115009 4136471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00255 1 242 MADS-box Gene Family AT1G24260 69.262 6.45e-106 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Eupl04g00255 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00255 - - nnu:104592854 408.683