Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00249 ATGATAAGGAGAGGAGTCGAGGAGGAGAAAGGTAGAAGAGAAGAAGAGAAGGGGAAAGGTTTTATGGACTGGGACTTGAAAATACCTTCTTGGGATTTTCCTGAATTTGAGCGAGAAACCGACCCCAACATCGCTCCCGTTGTTGGGTCGAGTACCGTAGGCGGGCAGAAGACTAAAGGGGATTGCTCGGTTGATTTGAAGCTTGGGAGGTTGGGGGATTTTGGAGACGGGTCGGTGGACAAGTGGAAAGATTCAAGGGTCTCAACTATGGTGTCATCACCGTTGGGTTCATCGAAGAGGGCTAGGGCCCCTAGTAATGGAACCCAGACCGTTTCATGCTTGGTTGATGGATGCAACTCAGACCTTACTAAATGCAGGGATTATCACAGGCGCCATAAGGTCTGTGAGGCCCATTCTAAAACTCCGAAAGTGCTGGTCGGTGGTCAGGAGCAGCGGTTTTGCCAGCAGTGCAGCAGGTTCCATTTATTGGTGGAGTTTGATGAGGTAAAGAGAAGCTGTAGGAAACGTCTTGATGGACACAACCGGCGACGACGGAAGCCTCAGCCAGAATCCCTGACCATGAATTCCGGAAGCTTATACTCCAATCACCAAGGTACCAGGTTATTGCCATTCAATAATGCACAAATATTTCCATCAGCTACTGTGGTGAGCACCACCTGGGCCAGTGTTGTCAAAACTGAGGAAGATAGTATGATCTATAACTGCCACCCCTCGTTGCACTACATTGACAGACAAAACCCGTTTCCCGGATCCTTCTCTAACAGCTACAAAGGAGGAGGGAAGCAATTCCCCTTCTTGCAGGTTAATGACTCTGCATTTGGCAATCGGACAGCCCCTGAAGCTTCCATATGCCAGCCGCTTCTCAGTACCATTGCCTCATCAGAAAGTGGTGGAACTGGCAGGAAGATGTTCTCTGATGGGTTAACTCGAGTCCTCGACTCCGATTGTGCTCTCTCTCTTCTGTCATCACCGCCGACCCATACTTCAGGGATCAGTCTGAGCCACGTGGTGCAGCCTGACTCAATCCCCATGACTCAGCCCCTAGTACCAGGCCTGCAGTATAATGGTATAGGTAGGTACCAATCACAGGGAATGGAAGGTGAGCCAGTGAGTTCAGTTTTAGTTTCCAATGCCAGCGAAGCTGAACTCCATTGCCAAGGGATCTTTCATGTGGGGCCTGACGGGTCGTCCCAAAATGGGGTCCCACAGACGCTTCCCTTCTCATGGCACTAG 1254 0.504 MIRRGVEEEKGRREEEKGKGFMDWDLKIPSWDFPEFERETDPNIAPVVGSSTVGGQKTKGDCSVDLKLGRLGDFGDGSVDKWKDSRVSTMVSSPLGSSKRARAPSNGTQTVSCLVDGCNSDLTKCRDYHRRHKVCEAHSKTPKVLVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQPESLTMNSGSLYSNHQGTRLLPFNNAQIFPSATVVSTTWASVVKTEEDSMIYNCHPSLHYIDRQNPFPGSFSNSYKGGGKQFPFLQVNDSAFGNRTAPEASICQPLLSTIASSESGGTGRKMFSDGLTRVLDSDCALSLLSSPPTHTSGISLSHVVQPDSIPMTQPLVPGLQYNGIGRYQSQGMEGEPVSSVLVSNASEAELHCQGIFHVGPDGSSQNGVPQTLPFSWH* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00249 417 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 62 360 IPR044817 GO:0003677
Eupl04g00249 417 Gene3D - 104 174 IPR036893 GO:0003677|GO:0005634
Eupl04g00249 417 MobiDBLite consensus disorder prediction 178 199 - -
Eupl04g00249 417 Pfam SBP domain 113 186 IPR004333 GO:0003677
Eupl04g00249 417 SUPERFAMILY SBT domain 111 192 IPR036893 GO:0003677|GO:0005634
Eupl04g00249 417 ProSiteProfiles Zinc finger SBP-type profile. 110 187 IPR004333 GO:0003677
Eupl04g00249 417 FunFam Squamosa promoter-binding-like protein 14 104 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00249 Eupl-Chr4 4004765 4010365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00249 22 416 SBP-box Gene Family AT5G50670 38.679 1.71e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl04g00249 SBP 9.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00249 - - nnu:104591759 591.267