Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00222 ATGGCCCCAAAGAGAGGTGGAAAAGCGCCTGTAGCACCGGCTAAGAAGAAACCGGAGAAGGTCGTGAACCCATTGTTCGAGAAGCGTACGAAGCAGTTTGGTATTGGAGGGGCGTTGCCTCCAAAGAGGGATTTGCATCGGTTCGTGAAGTGGCCCAAGGTTGTTCGCATTCAGAGGCAGCGTAGGATTCTCAAGCAGCGTTTGAAGGTCCCCCCAGCCTTGAACCAGTTCACAAAGACACTGGACAAGAACCTTGCAACAAGCCTATTCAAAATGCTTCTCAAGTACAGGCCTGAGGACAAAGCTGCGAAGAAGGATCGTCTTCTGAAAAGGGCTCAGGCTGAGGCTGAAGGAAAGACTGTTGAGGTTAAGAAGCCTATTGTCGTGAAGTATGGACTCAACCACGTTACCTACCTTATTGAGCAGAACAAGGCGCAATTGGTAGTTATTGCTCATGACGTGGACCCAATAGAGCTGGTTGTCTGGCTTCCTGCTTTGTGCAGGAAGATGGAGATCCCCTACTGCATTGTGAAGGGAAAAGCACGCTTGGGAGCGATTGTCCACAAGAAAACTGCTGCAGTTTTGTGTTTGACCACTGTCAAGAACGAGGATAAGTTGGAATTCAGCAAGATCTTAGAGGCTATCAAGGCCAACTTCAACGATAAGTATGATGAGTACCGGAAGAAGTGGGGAGGTGGGATCATGGGCTCCAAATCCCAGGCCAAAACCAAGGCTAAGGAGAAGCTTCTTGCCAAGGAAGCTGCACAGAGGATGACATAG 780 0.4949 MAPKRGGKAPVAPAKKKPEKVVNPLFEKRTKQFGIGGALPPKRDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTKTLDKNLATSLFKMLLKYRPEDKAAKKDRLLKRAQAEAEGKTVEVKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGAIVHKKTAAVLCLTTVKNEDKLEFSKILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKEKLLAKEAAQRMT* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00222 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Eupl04g00222 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Eupl04g00222 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 206 IPR004038 -
Eupl04g00222 259 SUPERFAMILY L30e-like 86 220 IPR029064 -
Eupl04g00222 259 Gene3D - 51 234 IPR029064 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
Eupl04g00222 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Eupl04g00222 259 FunFam 60S ribosomal protein L7a 51 234 - -
Eupl04g00222 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00222 Eupl-Chr4 3646085 3653901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00222 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.100 1.08e-166 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00222 K02936 - nnu:104592821 453.366