Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00198 ATGGAGAAGCTCAATTTCGTTAGAAATGGAGTTATCAAATTGCCTCCCGGGTTCCGCTTCCATCCCACAGATGAAGAGCTTGTTCTTCAGTACTTGAGGCGCAAAGTATTTGCTTGCCCATTGCCCGCTTCGATCATTCCTGAGGTCGATGTTTGCAAGTATGACCCTTGGGATTTGCCAGGTGATTCCGAGCAAGAACGGTACTTTTTTAGTCCTAGGGAAGCAAAGTACCCGAATGGAAACAGACCCAACAGAGCAACTGGTACTGGATACTGGAAGGCTACTGGTATAGATAAACAAATTGTTGATTCTAGAAGCAATCAAGTAGTGGGGTTGAAGAAAACTCTGGTTTTCTACAGACGGAAGCCTACCAATGGGTTTAGAACTGATTGGATCATGCATGAATATCGCCTTGTCGGTGCTGGTACTACAGCCTGCATTTTCCCGCAGAGAAAGAACTCAACCCAAAATTCCATGAAGCAAATGGAAGATTGGGTTATCTGTCGAATATTTCTGAAGAAAAGAAGTAAAAATGACGACGAGATCGCCCGACCACGCAACAGTAACAGAGTTTGTAATAATCTAGGAGTGGCTAGGCCTAGTTTTATTGATTTCATGATGCAAAACAAGACTGTTTCGAGTTCATCTTCCTCTTCTTCCGCTTCAAGTGGGATCACAGAAGTCTCTTCTACCGAATCCGATCAGGAAGAAAACAGTAGCTGCGATAGTATTTCTTCATTTTCTTGTAGAAGAGAACCATAA 762 0.4318 MEKLNFVRNGVIKLPPGFRFHPTDEELVLQYLRRKVFACPLPASIIPEVDVCKYDPWDLPGDSEQERYFFSPREAKYPNGNRPNRATGTGYWKATGIDKQIVDSRSNQVVGLKKTLVFYRRKPTNGFRTDWIMHEYRLVGAGTTACIFPQRKNSTQNSMKQMEDWVICRIFLKKRSKNDDEIARPRNSNRVCNNLGVARPSFIDFMMQNKTVSSSSSSSSASSGITEVSSTESDQEENSSCDSISSFSCRREP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00198 253 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 227 - -
Eupl04g00198 253 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Eupl04g00198 253 ProSiteProfiles NAC domain profile. 14 173 IPR003441 GO:0003677|GO:0006355
Eupl04g00198 253 MobiDBLite consensus disorder prediction 212 247 - -
Eupl04g00198 253 MobiDBLite consensus disorder prediction 212 253 - -
Eupl04g00198 253 Gene3D NAC domain 23 178 IPR036093 GO:0003677|GO:0006355
Eupl04g00198 253 SUPERFAMILY NAC domain 10 173 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00198 Eupl-Chr4 3297916 3299360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00198 1 244 NAC Transcription Factor Family AT5G13180 54.340 9.93e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl04g00198 NAM 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00198 - - nnu:104592799 376.326