Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00184 ATGCCTCTCTCTCTTTCTCTCTCTCTTTGCTCTGTAATGGCGGATTCCGGTCCCTACGATTTTGTGAAAACGCCTTCGGAGAGCGCCACTCGAAAACCACCTATTGTTTCGCGGATATTCCGTTGCCTCTACTGTTCTCGAAAGTTCTACACATCACAGGCTCTTGGCGGTCACCAGAACGCCCACAAGCGAGAACGAGCCGCTGCTCGCAGGACCTACTCCACCGAACCGTTTAGTAGACTCTACAATGAACCTTCTTCTGATCCTTGTGAGCCTCACGGACCCCACTATGCCTCGGTACCTCTCGGTAACCCAGCAAGCTCCATTCACGACTCTCTTTCGCCGGCCTCCGAAGCTCCTGATCACGTAAACCTGGATCTCACTCTTCATCTCTAG 396 0.5278 MPLSLSLSLCSVMADSGPYDFVKTPSESATRKPPIVSRIFRCLYCSRKFYTSQALGGHQNAHKRERAAARRTYSTEPFSRLYNEPSSDPCEPHGPHYASVPLGNPASSIHDSLSPASEAPDHVNLDLTLHL* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00184 131 MobiDBLite consensus disorder prediction 56 120 - -
Eupl04g00184 131 SUPERFAMILY beta-beta-alpha zinc fingers 38 67 IPR036236 -
Eupl04g00184 131 PANTHER ZINC FINGER PROTEIN JAGGED 23 104 IPR045320 GO:0003700
Eupl04g00184 131 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Eupl04g00184 131 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Eupl04g00184 131 Gene3D Classic Zinc Finger 19 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00184 Eupl-Chr4 3109663 3110066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00184 34 72 C2H2 Transcription Factor Family AT5G14010 79.487 3.41e-16 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl04g00184 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00184 - - vvi:104881652 140.198