Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00180 ATGAAAATACCAGAAAACCACCATCTCCATCTCTCAAACCAGCTTCTTTCCTCCCTAATGGAGGAAATCTGTCTCATTCAGACATTCAAAGGAAAATGGTCTGTAATAAAAAACAGACTCAACGAGCTCCAAACTCAACTCAAAGATCTATCTGATTTCCCTAATATCACTTCCAATCCTCTCTCTTGCGAACTCTTACAGTTTATCTCTCAAACCCTCACTGACGCTCTCGCGCTTGCAATGAAGTGCAGAAATCCTAATCTATCTGCAGGGAAGCTCAGGACGCAGAGCGATATTGATTCGATTGCAGCGCAGCTCGATCAGCATGTCAAAGACAGTGAGCTTTTGATCAGGAGTGGTGTTCTTCAAGAGAGTATTGCTGGTTTGACGGAGACGACGAGTTCGAAGAGGGAAGCGATCCTAGTCGAAGCGAGGAATTTGATAACTCGTTTGCAGATCGGGAATCCCGAGTCGAAGAACGCTCCGATGGATTTGATGCTAAGTTTGCTTCAGGAGGATGACAAAAACGTGTTAATCGCCGTTGCGCAGGGTGCGGTACCGGTGCTCGTTCGGTTGCTAGATTCGAGCTGTGTGGAGATTAAAGAGAAAGCCGTCTTGGCGATTTCTTGGGTTTCTATGGTGGATAGCAGCAAGAATGCTTTGGTTGCTGAGGGAATTTTTCTTTTAAATCATCTTCTTCGGGTTCTCGAATCAGGAAGTGGTTTTGCGAAGGAGAAGGCTTGTATTGCTCTTCAAGCTCTCAGTTTTTCGAAGGAGAACGCTAGAGCAATAGGGTCTAGGGGTGGAATTTCTTCTCTTCTGGAGATTTGCCAGGCCGGAACACCCGCTTCTCAGGCTGTCGCAGCCGGAGTGCTGAGAAATCTCTCCGGATTTCCTGAAATCGTAAAGAATTTTTTTGAGGAAAACGCGGTTCCGGTCCTCATCGGGCTTTCAGCTTCAGGGACTTCGGTGGCACGAGAAAATTCAATCGGATGTTTGTGTAATTTAGTATTGGAAGATGAAAGCATGAAGCTCTTGGTTGTTACGGAAGGTGGGATTGAGTGTCTGAAGAATTTCTGGGACGCAGCTTCCATGGCTCATAGTCTCGAGGTCGCAGTGGGATTTTTAAGGAACTTAGCTTCTTACAGGCCTATTGCTGAAGTTCTTAGTTGGGACGGTTTTATACCTCGGCTAGTTGGGGTACTGAGTTGTGGGGTGTCCAGTGTGAGAATTGCCACGGCCAGAGCTGTTTGTGAGCTGGGTTTCAGCACGAAGACAAGGAAAGAGATAGGAGAATCTGGGTGTATTCCTCCTTTGATTGCGATGTTGGACTCAAAGGCAGTCGAAGAGAAAGAAGCGGCTGCAAAGGCATTGTTTTCTCTTATGCAGTATGCGGGTAACAGAAGAATTTTTAGGAAGGAAGAGAGAGGGATAGTGGGTACAGTTCAGCTTCTAGATCCTTCGATACCGAATTTGGAGAAGAAATACCCAATGTCTATTTTGCTTTCGATCTCACAGTCTGAAAAGTGTAGGAAACAGATGGTAGCTGCAGGGGTTTGTGCATACTTGCATAAACTCATTGATATGGAGATTGATGGTGCTAAGAAGCTTCTGGAAAGCTTGGGTCGGGGTAAGATATGGGGTGTGTTTGCCAGGACATGA 1662 0.4603 MKIPENHHLHLSNQLLSSLMEEICLIQTFKGKWSVIKNRLNELQTQLKDLSDFPNITSNPLSCELLQFISQTLTDALALAMKCRNPNLSAGKLRTQSDIDSIAAQLDQHVKDSELLIRSGVLQESIAGLTETTSSKREAILVEARNLITRLQIGNPESKNAPMDLMLSLLQEDDKNVLIAVAQGAVPVLVRLLDSSCVEIKEKAVLAISWVSMVDSSKNALVAEGIFLLNHLLRVLESGSGFAKEKACIALQALSFSKENARAIGSRGGISSLLEICQAGTPASQAVAAGVLRNLSGFPEIVKNFFEENAVPVLIGLSASGTSVARENSIGCLCNLVLEDESMKLLVVTEGGIECLKNFWDAASMAHSLEVAVGFLRNLASYRPIAEVLSWDGFIPRLVGVLSCGVSSVRIATARAVCELGFSTKTRKEIGESGCIPPLIAMLDSKAVEEKEAAAKALFSLMQYAGNRRIFRKEERGIVGTVQLLDPSIPNLEKKYPMSILLSISQSEKCRKQMVAAGVCAYLHKLIDMEIDGAKKLLESLGRGKIWGVFART* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00180 553 Pfam Armadillo/beta-catenin-like repeat 174 209 IPR000225 GO:0005515
Eupl04g00180 553 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 5 552 - -
Eupl04g00180 553 SUPERFAMILY ARM repeat 146 528 IPR016024 -
Eupl04g00180 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 184 226 IPR000225 GO:0005515
Eupl04g00180 553 Gene3D - 143 537 IPR011989 -
Eupl04g00180 553 SMART arm_5 382 422 IPR000225 GO:0005515
Eupl04g00180 553 SMART arm_5 423 463 IPR000225 GO:0005515
Eupl04g00180 553 SMART arm_5 340 381 IPR000225 GO:0005515
Eupl04g00180 553 SMART arm_5 257 297 IPR000225 GO:0005515
Eupl04g00180 553 SMART arm_5 173 213 IPR000225 GO:0005515
Eupl04g00180 553 SMART arm_5 298 338 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00180 Eupl-Chr4 3031840 3033993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00180 388 528 U-box Gene Family AT2G23140 29.577 3.55e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00180 - - nnu:104592787 772.311