Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00163 ATGGCCTCGAGATATTGGGTGGTTTCTCTTCCGGTTCAAACATCCGCTTCGTCTCTATGGAGTCGTTTGCAGGAAGCGATCTCCAAGCATTCCTTTGATACTCCTCTCTACAGGTTCAACACGCCGAATCTCCGTGTAGGAACTCTAGATTCTCTTTTATCTCTCAGCGACGATCTTTCGAAGTCGAATAGCTTTGTTGAAGGAGTATCTCACAAGATAAGGCGTCAGATCGAGGAATTTGAGAGGGTTTCGGGCTTCGAGAGTGGTGCTCTAACCGTCGATGGAGTCCCCGTTGATACTTACCTCACGAGATTTGCATGGGATGAAGCCAGGTACCCGACGATGTCACCTCTCAGGGAGATTGCGGACGGCATTCACGTTCAAGTAGCCAAGATTGAGGATGATCTCAAGGTTCGTGTTGCTGAGTACAACAGTGTGCGCAGTCAGCTTAATGCAATCAATAGAAAGCAAAGTGGAAGCTTAGCCGTCCGTGATCTCTCTGATTTAGTGCAGCCAGAGGACATTATCGCAACGGAACATTTAATTACCCTTCTTGCTGTTGTTCCCAAGTATTCACAGAAGGACTGGTTGTCAATCTATGAAACGCTGACTACTTATGTGGTCCCTAGGTCCTCCAAGAAGTTGCACGAGGACAATGAGTATGCTCTTTACACTGTAACACTATTTCGTCGTGTGGCTGACAACTTCAAAACAAGTGCACGTGAAAGAGGATTTCAGATTCGTGATTTTGAATATAGCCCAGAAGCACAAGAGAATCGGAAGCGGGAGTTGGAAAAATTGATGCAAGATCAGGAAAGCTTGAGAAGCTCTCTTCTGCAGTGGTGCTATACCAGTTACGGAGAGGTTTTTAGTGCTTGGATGCACTTCTGTGCTGTACGTGTCTTTGTTGAGAGCATTCTAAGATATGGCTTGCCACCGTCGTTCTTGGCAGCAGTATTGGCTCCATCTGTGAAAGGTGAGAAGAAAGTACGTTCTATTCTTGAAGGGTTTTGCAACAGCACAAACAGCACCTACTGGAAATCCGAAGATGAAGTCGGAGCGATGGCTGGTCTAGGAGGCGAGGCTGATGCTTATCCGTACGTGTCCTTCACAATCAATATCATTTGA 1128 0.4645 MASRYWVVSLPVQTSASSLWSRLQEAISKHSFDTPLYRFNTPNLRVGTLDSLLSLSDDLSKSNSFVEGVSHKIRRQIEEFERVSGFESGALTVDGVPVDTYLTRFAWDEARYPTMSPLREIADGIHVQVAKIEDDLKVRVAEYNSVRSQLNAINRKQSGSLAVRDLSDLVQPEDIIATEHLITLLAVVPKYSQKDWLSIYETLTTYVVPRSSKKLHEDNEYALYTVTLFRRVADNFKTSARERGFQIRDFEYSPEAQENRKRELEKLMQDQESLRSSLLQWCYTSYGEVFSAWMHFCAVRVFVESILRYGLPPSFLAAVLAPSVKGEKKVRSILEGFCNSTNSTYWKSEDEVGAMAGLGGEADAYPYVSFTINII* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00163 375 CDD V-ATPase_C 5 372 IPR004907 GO:0033180|GO:0046961|GO:1902600
Eupl04g00163 375 Gene3D - 163 251 - -
Eupl04g00163 375 Gene3D - 41 312 - -
Eupl04g00163 375 Pfam V-ATPase subunit C 5 368 IPR004907 GO:0033180|GO:0046961|GO:1902600
Eupl04g00163 375 FunFam V-type proton ATPase subunit C 163 251 - -
Eupl04g00163 375 SUPERFAMILY Vacuolar ATP synthase subunit C 2 374 IPR036132 GO:0015078|GO:0033180|GO:1902600
Eupl04g00163 375 Gene3D Vacuolar atp synthase subunit c; domain 1 5 334 - -
Eupl04g00163 375 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 2 374 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00163 Eupl-Chr4 2794050 2805886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00163 1 374 Primary Pumps ATPases(2) AT1G12840 80.749 0.0 645
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00163 K02148 - tcc:18601106 657.521