Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00161 ATGGAAGCCTTTTCGCACCCAAACCTGCCTTTTCTTCTTGACTCTGTTTTCCTTCCAAACACTCCCATTAAGATGTCTGGTTTATTCGAGGAAGGAGACATCGACACCTCCTCTTTTCCTTACTACCCATCTATGCCTCTTCAAGAGATTCCATTTGATGTTAGAATTCATGAAAGTAGTGATACTGGACCTTCTTTCACTGACAAACAGAAGACAGATTCTTCATCCATGGTTCTTGATTCTGAAGGTGATTATCAAATTACTGAGAAGGAGACCCCATTAATGGAGAAAAAGAGGAAAAACAGTGATGGGTCTTGCTTAAGTTCTGCTCAATCCAAGGAAGCAAAAGCCAAGAAACAAAGGAAATGCAGTGCTGATAAGAAGAATCAGAAGCAAGTCACTGAAGATCCTCCAACTGGTTACATTCATGTAAGAGCAAGGAGGGGTCAAGCAACAGACAGTCACAGCCTTGCAGAAAGGGTAAGAAGAGAAAAAATTAGTGAGAGACTGAAGATGTTGCAAGGTCTTGTTCCTGGTTGTGACAAGGTGACTGGTAAGGCCCTTATGTTGGATGAGATAATCAACTATGTCCAGTCCCTACAGAATCAAGTGGAGTTCCTATCTATGAAGCTTGCTTCTTTCAATCCCATGTTCTATGACTTTGGTGTGGATTTAGATACCTTCATGGTTAAGCCAGAGGTTCAGAAATCCACAGCTTTTGCTGATCCTACAACCACCTTCACTGCAACAAATAACTACCCTCTTCTAGACAGTTCAGTTTCTTTTTTACTTCAACAAGGGGAGAGACCCAATTCCTTCTCTCAGGATAACGGAAATCTATTATGGGATCTAGTTGAGCAGAGACAAAGGTTTACCAACTTATCTTCTTTCCAGTAA 897 0.4125 MEAFSHPNLPFLLDSVFLPNTPIKMSGLFEEGDIDTSSFPYYPSMPLQEIPFDVRIHESSDTGPSFTDKQKTDSSSMVLDSEGDYQITEKETPLMEKKRKNSDGSCLSSAQSKEAKAKKQRKCSADKKNQKQVTEDPPTGYIHVRARRGQATDSHSLAERVRREKISERLKMLQGLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASFNPMFYDFGVDLDTFMVKPEVQKSTAFADPTTTFTATNNYPLLDSSVSFLLQQGERPNSFSQDNGNLLWDLVEQRQRFTNLSSFQ* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00161 298 MobiDBLite consensus disorder prediction 114 133 - -
Eupl04g00161 298 Pfam Helix-loop-helix DNA-binding domain 154 201 IPR011598 GO:0046983
Eupl04g00161 298 FunFam Basic helix-loop-helix transcription factor 147 219 - -
Eupl04g00161 298 MobiDBLite consensus disorder prediction 60 82 - -
Eupl04g00161 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 217 IPR036638 GO:0046983
Eupl04g00161 298 MobiDBLite consensus disorder prediction 57 140 - -
Eupl04g00161 298 CDD bHLH_AtBPE_like 140 225 - -
Eupl04g00161 298 SMART finulus 156 206 IPR011598 GO:0046983
Eupl04g00161 298 Gene3D - 147 218 IPR036638 GO:0046983
Eupl04g00161 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 200 IPR011598 GO:0046983
Eupl04g00161 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 244 IPR024097 GO:0006355
Eupl04g00161 298 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00161 Eupl-Chr4 2782074 2783650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00161 1 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 45.520 1.33e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g00161 HLH 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00161 - - vvi:100268131 359.762