Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00150 ATGCTGTCGAGGGTTAATGGAGTTGTTTGGATGGAAGAAGAAGGAGAGGAAGAAGACGCGGTGTCATGGACGAGGAACAATGGAGGAGGAGGAGAGAACAGGGACGACATGGGTTCTCTATCTACGTTCAAATCAATGCTCGAAGAGGACTGGTACGTGAACAGTAATGGCAATCCATCTCACCATGACTTTCAGAGTATCCAAAGTCACCAAGAGATTAAAGACATTACCTTTTCTTCAAACCCCACTGTAGCGGAGAATCTACTGTTGCAGCCAGTCGATTCGTCTTCTTCTTGTTCTCCGTCTTCGGTCTTCAATCTCGACCCATCGCAGGTACAGTCGTTCTTGCCTCCTAAATCTTGTTTGTCTTCGCTCATCAACGTCGTCTGCAGCAACCCTTTTGACAACGGTTTCGATTTGGGTTGCGAACCAGGGTTTCTCATGGGGAACCAGACTTCGAATTCCCCTGTTTTGATGAACAGGGGAAGTGGGGTTTTGACGGGGTTCAACGGTTTGAGCTCGCAGGGCCATATGGTTACTCCTGATCTGAGCTCAAATTCCCAATTTGCGAATACCCGTTTGATGCCATTGGCCGATAATGGTATCACTTTCGGCAACGGCTTCAATCCGACTGGTTTCGGAGGGTTCGAGGCTTCTGGGAATTCTTTACTTCTCAATAGGTCTAAAGTGTTGAGACCTCTCGAGATTTTCCCTCCTGTCGGTGCGCAGCCCACTCTCTTTCAGAAGAGAGCTGCTCTGCGACAGAATTCAGCTTTAGCGGACAAAGGGGGGAGCTTGGGGGTTTTAAGTTCGGATATAGGCCAGTTTTCAATCAGGATGGAGGGTAATAAGGGAAAGAGGGAATTGGAAGAAGAGCAAGAGAAAAGGAGGAAGAACAACGAGGAGGATGAACTGGACGAGGCGAGCATTGATGGGTCCGGTTTGAATTATGATTCTGATGAGGCCACGGAGAACAATAAGATGGAGGAGAGCACAAAGAATGGAGGGAACAATTCAAACGCGAATAGCACTGTGACGGGTGGAGACCAGAAGGGGAAGAAGAAGGGGCTCCCAGCTAAAAATCTGATGGCTGAGAGGCGCCGAAGGAAGAAACTAAATGACAGGCTCTACATGCTGAGGTCTGTCGTTCCAAAGATTAGCAAGATGGATAGGGCTTCAATCCTAGGGGATGCAATCGAGTACTTGAAGGAGCTTCTCCAGAGGATCACTGATCTTCACAACGAACTAGAGTCAACCCCTCCTGGTGGTTCATTGCCGCCTACTACGAGCTTCCACCCTTTGACACCCACCCCACCTACCCTGCCCTGCCGTGTCAAGGAGGAACTCTGCCCGAGCTCATTGCCGAGTCCTAATGGCCAACCTGCAAGGGTTGAAGTCAGGGTAAGAGAAGGGAGAGCTGTCAACATTCACATGTTTTGTTCCCGCAGACCGGGTCTCTTACTCTCCACAATGAGGGCTCTTGATGGCCTTGGCCTAGACATCCAGCAGGCAGTCATCAGCTGTTTTAATGGGTTTGCTCTAGATGTTTTCCGAGCCGAGCAATGCAAGGAAGGCCCGGACGTCTTGCCTGAGGATATCAAAGCAGTTCTCTTGGATTCAGCTGGTTTCCATGGTATGATGTAG 1644 0.4957 MLSRVNGVVWMEEEGEEEDAVSWTRNNGGGGENRDDMGSLSTFKSMLEEDWYVNSNGNPSHHDFQSIQSHQEIKDITFSSNPTVAENLLLQPVDSSSSCSPSSVFNLDPSQVQSFLPPKSCLSSLINVVCSNPFDNGFDLGCEPGFLMGNQTSNSPVLMNRGSGVLTGFNGLSSQGHMVTPDLSSNSQFANTRLMPLADNGITFGNGFNPTGFGGFEASGNSLLLNRSKVLRPLEIFPPVGAQPTLFQKRAALRQNSALADKGGSLGVLSSDIGQFSIRMEGNKGKRELEEEQEKRRKNNEEDELDEASIDGSGLNYDSDEATENNKMEESTKNGGNNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRITDLHNELESTPPGGSLPPTTSFHPLTPTPPTLPCRVKEELCPSSLPSPNGQPARVEVRVREGRAVNIHMFCSRRPGLLLSTMRALDGLGLDIQQAVISCFNGFALDVFRAEQCKEGPDVLPEDIKAVLLDSAGFHGMM* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00150 547 SMART finulus 362 411 IPR011598 GO:0046983
Eupl04g00150 547 MobiDBLite consensus disorder prediction 329 349 - -
Eupl04g00150 547 Gene3D - 350 419 IPR036638 GO:0046983
Eupl04g00150 547 MobiDBLite consensus disorder prediction 281 304 - -
Eupl04g00150 547 Coils Coil 286 311 - -
Eupl04g00150 547 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 272 543 - -
Eupl04g00150 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 405 IPR011598 GO:0046983
Eupl04g00150 547 MobiDBLite consensus disorder prediction 281 364 - -
Eupl04g00150 547 CDD ACT_UUR-ACR-like 476 517 - -
Eupl04g00150 547 FunFam BHLH transcription factor 352 420 - -
Eupl04g00150 547 Pfam Helix-loop-helix DNA-binding domain 363 405 IPR011598 GO:0046983
Eupl04g00150 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 426 IPR036638 GO:0046983
Eupl04g00150 547 CDD bHLH_AtAMS_like 359 426 - -
Eupl04g00150 547 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00150 Eupl-Chr4 2546676 2551114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00150 22 520 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 55.534 7.99e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl04g00150 HLH 2.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00150 - - nnu:104591842 842.417