Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00148 ATGTCTTCTTCAGAGGTTTCGATTAAAGGTAATTGCGCTAACGTCCGCGGAGAGAGCTTCTCCTCGAGTTGTAGTGAGCCTAAAGATGGAGGAATCGCGAGGACCGGAGTTACAGAGGCGCCGAGAGGATATTCGAGTTTTCCGGCTGCCGGAAAAGGTTCGGAAGATGCGCTTTATTCGGAGCTCTGGCATGCTTGTGCGGGTCCACTGGTGACGGTGCCGCGCGAGGGAGAGAAAGTTTTTTATTTTCCCCAGGGACACATCGAGCAGGTCGAAGCGTCGACGAATCAGGTCGCTGACCAGCAGATGCCGGTTTATAATCTTCGGTCGAAGATCCTCTGCCGTGTGATCAACGTCCATTTGAAGGCCGAGCCAGACACTGACGAGGTGTTCGCACAAGTCACTTTGCTTCCTGAATCGAATCAAGAAGAGAATGCATTGGAGAAAGAGCCGGTGACCACTCCGCCGCCACGTCCTCGTGTACATTCGTTTTGTAAGACTCTGACCGCCTCTGATACAAGCACTCATGGTGGATTCTCTGTGTTGAGACGGCATGCGGATGAATGCCTACCGCCACTGGTTACGGATATGTGCAGACAACCTCCAACACAGGAGTTGGTAGCCAAGGATTTGCATGGGACTGAGTGGCGGTTCCGGCATATCTTTCGGGGTCAACCTAGGAGGCACCTCCTTCAAAGTGGTTGGAGTGTCTTTGTTAGCTCCAAAAGGCTTGTTGCAGGGGATGCTTTTATTTTTCTTAGAGGTGAAAATGGGGAACTCCGTGTGGGGGTGAGACGTGCTATGAGACAGCAGAGTAATGTTCCATCGTCGGTCATATCCAGTCACAGCATGCACCTCGGTGTCCTTGCAACAGCATGGCATGCTGTCTCAACGGGAACCATGTTCACTGTCTATTACAAACCTAGGACAAGCCCTGCTGAGTTTATTGTTCCGTTTGATCAATATATGGAGTCTGTTAAGAGCAACCACTCTATAGGGATGAGATTCAAAATGAGGTTCGAAGGTGAAGAAGCTCCAGAGCAGAGATTTACAGGTACCATAGTTGGTATGGGAGATGCTGATTCCGACAGGTGGCCTTTATCAAAATGGAGATGCCTGAAGGTGAGGTGGGATGAAAATTCTTCTGTTCCTCGTCCAGAGAGAGTCTCTCCTTGGAAAATAGAACCTGCTTTGTCTCCTCCTGCCCTTAATCCGCTTCCAATGCCTAGGCCAAAAAGGTACCGTCCAAACATGGTGCCGTCATCTCCTGACTCCTCTGTTCTCACGAGAGAAGGTTCATCTAAAGTCACAGTAGACCCTTTGCCAGTAAATGGATTCTCAAGGGTCTTGCAAGGTCAAGAAATCTCGACCTTGCGAGGCTCTGTTGCTGAAAATAACGAGTCAGACACTGCTCAAAAGCCTGTTGCATGGCCTCCATCGCAAGACGAAGAGAAAATTGACATGGTTTCTAATCAGAGAAGATTTGGATCAGAGAACTGGGTACCCCTAGCGAGGCCCGAGCCAACTTATACGGATCTACTATCTGGTTTTCGATCCCCCAATGACTCCCCTCATGGGTTCTGCCCACCCTTTGCTGGCCAAACCCCAGATGATGCTAACCCTCTGAAGAAGCATTTTCAAGATAAGGAAGGTAAATTCAACTTTCTTGCGGGCCCTTGGTCGTTGATGCCTCCGAGCCCTTCGTTGAACATGTTGGACAATGAAATGAAGGTTCCTCCACAAGCTGGTGAGATATCTCATCAAAAACAAGGGACTGTTCGATATGGTGGGTATCCTGTGTTGCAGAGTCTCAGGGTTGAGCAGCATCCAGGAAACTGGTTGATGCCTTTCTCGCCATCTCATTCGGAGACTCTACCTCATCCAAGAGGGGTAAGACCGCAATCTCCCATGTTACAACAACGTGAGGCTGTAAAATCCAAAGGAGATGGCAACTGCAAGCTCTTCGGGATTCCCCTCTTCAGTAACCCTGCGGCACTGGAACCAAATCTGTCACATACAAATGCATCATATGAGCCAGAAGGTCATATCCATCCTGTGTTGCACCACCCTCTGGCTTTGGAGTCTGATCAACAGTCAGAGCTATCAAAAGGCTCGAAGTTGGCTGATATCGCACTTATGGGTACTGAGCAGGAGAAACCTTCTCAACAGCGATCTAGAGATTTTCAGAGCAAACTTCAGGGTGTTTCAACCAGGAGTTGCACTAAGGTTCACAAGCAGGGGATTGCTCTTGGGAGGTCTGTGGACCTTACCAAGTTCAATGGCTATGATGAATTGATCACCGAGTTAGATCAAATGTTTGAATTTCACGGTGAATTAATGGCTGCCAACAAAAGTTGGCTGATTGTATATACTGATGATGAGGGTGATATGATGCTTGTAGGAGATGACCCCTGGCAGGAATTCTGTAGCATGGTTCGCAAGATCTTCATCTACACTAGAGAGGAGGTCCAGAGGATGAACCCTGGGACTTTGAACCCAAAGATTGAGGAAAACACAGTCACTGGAGAGGAAAGAACGGGTGGAAAAGAACCAAAATGTTCGCTGCTTCCCCTGGCAGCTAGTCCTGAGAATTGCTAG 2598 0.4881 MSSSEVSIKGNCANVRGESFSSSCSEPKDGGIARTGVTEAPRGYSSFPAAGKGSEDALYSELWHACAGPLVTVPREGEKVFYFPQGHIEQVEASTNQVADQQMPVYNLRSKILCRVINVHLKAEPDTDEVFAQVTLLPESNQEENALEKEPVTTPPPRPRVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLVTDMCRQPPTQELVAKDLHGTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQSNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPAEFIVPFDQYMESVKSNHSIGMRFKMRFEGEEAPEQRFTGTIVGMGDADSDRWPLSKWRCLKVRWDENSSVPRPERVSPWKIEPALSPPALNPLPMPRPKRYRPNMVPSSPDSSVLTREGSSKVTVDPLPVNGFSRVLQGQEISTLRGSVAENNESDTAQKPVAWPPSQDEEKIDMVSNQRRFGSENWVPLARPEPTYTDLLSGFRSPNDSPHGFCPPFAGQTPDDANPLKKHFQDKEGKFNFLAGPWSLMPPSPSLNMLDNEMKVPPQAGEISHQKQGTVRYGGYPVLQSLRVEQHPGNWLMPFSPSHSETLPHPRGVRPQSPMLQQREAVKSKGDGNCKLFGIPLFSNPAALEPNLSHTNASYEPEGHIHPVLHHPLALESDQQSELSKGSKLADIALMGTEQEKPSQQRSRDFQSKLQGVSTRSCTKVHKQGIALGRSVDLTKFNGYDELITELDQMFEFHGELMAANKSWLIVYTDDEGDMMLVGDDPWQEFCSMVRKIFIYTREEVQRMNPGTLNPKIEENTVTGEERTGGKEPKCSLLPLAASPENC* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00148 865 Gene3D - 329 400 - -
Eupl04g00148 865 MobiDBLite consensus disorder prediction 459 475 - -
Eupl04g00148 865 MobiDBLite consensus disorder prediction 398 416 - -
Eupl04g00148 865 MobiDBLite consensus disorder prediction 419 433 - -
Eupl04g00148 865 Gene3D - 734 827 - -
Eupl04g00148 865 FunFam Auxin response factor 329 401 - -
Eupl04g00148 865 CDD B3_DNA 162 266 IPR003340 GO:0003677
Eupl04g00148 865 ProSiteProfiles PB1 domain profile. 738 822 IPR000270 GO:0005515
Eupl04g00148 865 MobiDBLite consensus disorder prediction 828 865 - -
Eupl04g00148 865 SUPERFAMILY DNA-binding pseudobarrel domain 156 295 IPR015300 -
Eupl04g00148 865 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 56 827 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl04g00148 865 Pfam B3 DNA binding domain 164 267 IPR003340 GO:0003677
Eupl04g00148 865 Gene3D - 161 268 IPR015300 -
Eupl04g00148 865 SMART B3_2 164 268 IPR003340 GO:0003677
Eupl04g00148 865 Pfam Auxin response factor 292 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl04g00148 865 FunFam Auxin response factor 733 827 - -
Eupl04g00148 865 MobiDBLite consensus disorder prediction 396 436 - -
Eupl04g00148 865 SUPERFAMILY CAD & PB1 domains 736 815 - -
Eupl04g00148 865 ProSiteProfiles B3 DNA-binding domain profile. 164 268 IPR003340 GO:0003677
Eupl04g00148 865 Pfam AUX/IAA family 718 823 IPR033389 -
Eupl04g00148 865 MobiDBLite consensus disorder prediction 16 37 - -
Eupl04g00148 865 MobiDBLite consensus disorder prediction 459 481 - -
Eupl04g00148 865 FunFam Auxin response factor 162 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00148 Eupl-Chr4 2513792 2522392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00148 1 864 B3 DNA Binding Superfamily AT5G62000 62.457 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl04g00148 B3 2.9e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00148 - - ming:122079441 1302.73