Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00143 ATGTATTTCGCGAAACTCGACGATTCTCCGATGTTTCGGAAACAGATTGAATGCCTGGAGGAGAGTGCCGAATCATTAAGGGAGAGAAGTCTAAAGTTTTACAAGGGATGTCGAAAGTACACAGAAGGGCTTGGGGAGGGTTATGATGGGGACATCGCTTTTGCAAGCGCCCTTGAAGCATTTGGCGGAGGGCATAATGATCCTATCAGTGTTGCTTTTGGAGGCCCTGTTATGACCAAATTTACGATTGCTTTGAGAGAAATTGGAACATACAAGGAAGTTCTTCGGTCCCAGGTTGAGCACATGCTAAATGATAGGTTGCTGCAGTTTGTTAACATTGATTTGCTTGATGTCAAGGAAGCTCGGAAGCGTTTTGACAAGGCTAGCCTTCTTTATGACCAGGCTCGTGAAAAGTTTCTTTCCCTGAGGAAAGGCACAAAGATGGACGTAGCTACCATCTTAGAGGAGGAACTTCACATTGCAAGGTCTACATTTGAGCAAGCTCGCTTCAATCTGGTTACTGCTCTTTCTAATGTTGAAGCAAAAAAGAGGTTTGAATTTTTGGAGGCTGTTAGTGGGACAATGGACGCTCATCTTCGTTACTTCAAACAGGGTTATGAACTATTACATCAGATGGAGCCGTATATTAATCAGGTTTTGACTTATGCACAACAGTCAAGAGAGAGGTCCAACTATGAGCAGGCAGCTCTTACCGAAAGGATGCAAGAGTACAAAAGACAGATTGATCGAGAAAGTCGGTGGTCTTCGAATGGCTCACATGGTTCTCCTAATGGGGATGGTATACAAGCCATTGGTAGAAGTTCACATAAAATGATAGAAGCTGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACCATTCGACAAGGTTATCTCTCAAAACGTTCATCCAACTTGAGAGGTGACTGGAAGAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTGTACTACTATCGCAAGCAATGGACCAGACCATCTGGAGCTGGGGGTCAACTTTCCAGTCAGAGAAATCATAACTCCTCTGAACTTGGTTCTGGGCTGCTGAGCCGGTGGCTTTCTTCTCATTATCACGGTGGAGTGCATGATGAGAAGTCTGTTGCTCATCACACTGTGAACTTGCTTACATCAACAATAAAAGTTGATGCAGACCAGTCAGATTTGCGATTCTGCTTCAGGATTATTTCACCATCGAAGAACTATACTTTGCAGGCAGAGAATGCAATGGATCAAATGGACTGGATTGAAAAGATAACCGGAGTTATTGCTTCACTGTTGAGTTCCCAGACACCTGAGCAACGTCTCCCTGCTATTTCCACGGGCACTGGTCATCATCGCTCTGCTAGTGAGAGTAGTTCGTTTGAGAGTTCCTCTGATTTTGATCACTCAGCAATTGAAGAATACACATCCGAGAAGCCCCTCATTGGACATCGTGAACGTTTTTCTAGAAGTTCCCAACAGCAGCGATTCAGTGTGAAAAGTGAGAAACCAATAGATGTGCTGAGAAGAGTATGTGGTAATGATAAATGTGCTGATTGTGGTGCTCCTGAGCCAGACTGGGCATCTCTAAACCTTGGTGTTCTTGTCTGCATTGAATGTTCAGGTGTTCATCGTAATCTCGGTGTACATATTTCAAAGGTAAGGTCGCTGACACTTGATGTGAAAGTTTGGGAGCCTTCTGTTATAACTTTGTTCCAGTCACTGGGTAATGCATTTGCTAATTCTGTCTGGGAGGAATTATTGCACTCGAGAAGTGCTTTTCTGGCTGGTGACATCCCTATAAGTTTCTCTAAGTCTGATAAACACCAAGTGCTCCCTATCAGTAAACCTAGTCATTCCGATCCTATTTCAATAAAAGAGAAGTTTATTCATGCAAAGTATGCAGAAAAGCTTTTCGTTCGCAAGCCAAAGGAGGATCAACATGTTCTTTCTGTGGTCCAACAGATGTGGGACAGTGTCCGTACCAATGACAAGAAAGCAGTATACCGTCATATTGTTAACTCTGACGCAGATGTCAATGCAGTGCATGGGCAAGCATCATTTAGCACGTCCTTAACTCTAGCGAAAGTAATGCTGTTGCAAGAGCAGCCAAGCCTTGGCCGCCACTCTAGCTGCTTAGCAGGAGATACTTTGGACAAGGACTCCGCAGCAAGCTCTTTGAACTCAAGTACAAGCGAGGACCGGAATGTGGAGGAATGTCTTGAGGGATGCTCCCTGCTTCACCTTGCGTGTCTAACTGCAGACATAGGCATGATAGAGCTCCTTTTACAGTATGGTGCCAACATAAATGCTCCTGATTCAAGAGGCCGGACACCTCTCCACCATTGTATTCTCAGAAGTAGAACAGTGTTTACTAAACTGCTTCTTACTAGGGGAGCCGACCCAAAGGCTGTAGATAGGGATGGCAAAATCCCTTTACAACTTGCAGCAGATTCAACCAACGATGAGGTCCTCATGCAAACAGCAAATACAAACAGATAA 2502 0.4432 MYFAKLDDSPMFRKQIECLEESAESLRERSLKFYKGCRKYTEGLGEGYDGDIAFASALEAFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLLDVKEARKRFDKASLLYDQAREKFLSLRKGTKMDVATILEEELHIARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALTERMQEYKRQIDRESRWSSNGSHGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQWTRPSGAGGQLSSQRNHNSSELGSGLLSRWLSSHYHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAMDQMDWIEKITGVIASLLSSQTPEQRLPAISTGTGHHRSASESSSFESSSDFDHSAIEEYTSEKPLIGHRERFSRSSQQQRFSVKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLHSRSAFLAGDIPISFSKSDKHQVLPISKPSHSDPISIKEKFIHAKYAEKLFVRKPKEDQHVLSVVQQMWDSVRTNDKKAVYRHIVNSDADVNAVHGQASFSTSLTLAKVMLLQEQPSLGRHSSCLAGDTLDKDSAASSLNSSTSEDRNVEECLEGCSLLHLACLTADIGMIELLLQYGANINAPDSRGRTPLHHCILRSRTVFTKLLLTRGADPKAVDRDGKIPLQLAADSTNDEVLMQTANTNR* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00143 833 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Eupl04g00143 833 Gene3D Arf GTPase activating protein 483 646 IPR038508 -
Eupl04g00143 833 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Eupl04g00143 833 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Eupl04g00143 833 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Eupl04g00143 833 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Eupl04g00143 833 SMART arf_gap_3 502 647 IPR001164 GO:0005096
Eupl04g00143 833 ProSiteProfiles PH domain profile. 292 430 IPR001849 -
Eupl04g00143 833 Gene3D - 647 827 IPR036770 -
Eupl04g00143 833 ProSiteProfiles Ankyrin repeat region circular profile. 775 807 - -
Eupl04g00143 833 CDD PH_ACAP 295 434 - -
Eupl04g00143 833 SUPERFAMILY PH domain-like 241 429 - -
Eupl04g00143 833 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 484 648 - -
Eupl04g00143 833 Pfam Putative GTPase activating protein for Arf 505 642 IPR001164 GO:0005096
Eupl04g00143 833 MobiDBLite consensus disorder prediction 250 270 - -
Eupl04g00143 833 Pfam PH domain 294 429 IPR001849 -
Eupl04g00143 833 CDD ArfGap 505 634 - -
Eupl04g00143 833 ProSiteProfiles Ankyrin repeat region circular profile. 742 773 - -
Eupl04g00143 833 CDD BAR_SFC_plant 14 215 IPR035670 -
Eupl04g00143 833 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Eupl04g00143 833 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Eupl04g00143 833 Pfam Ankyrin repeats (many copies) 745 796 IPR002110 GO:0005515
Eupl04g00143 833 ProSiteProfiles Ankyrin repeat profile. 775 807 IPR002110 GO:0005515
Eupl04g00143 833 SMART ANK_2a 775 804 IPR002110 GO:0005515
Eupl04g00143 833 SMART ANK_2a 742 771 IPR002110 GO:0005515
Eupl04g00143 833 SUPERFAMILY ArfGap/RecO-like zinc finger 502 642 IPR037278 -
Eupl04g00143 833 PANTHER CENTAURIN/ARF 4 826 IPR045258 GO:0005096
Eupl04g00143 833 Coils Coil 227 247 - -
Eupl04g00143 833 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Eupl04g00143 833 MobiDBLite consensus disorder prediction 442 466 - -
Eupl04g00143 833 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Eupl04g00143 833 Gene3D - 285 443 IPR011993 -
Eupl04g00143 833 Coils Coil 118 138 - -
Eupl04g00143 833 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 647 IPR001164 GO:0005096
Eupl04g00143 833 SMART PH_update 293 432 IPR001849 -
Eupl04g00143 833 SUPERFAMILY Ankyrin repeat 674 824 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00143 Eupl-Chr4 2445000 2467977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00143 514 641 C2H2 Transcription Factor Family AT4G21160 42.636 6.75e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00143 K12489 - nnu:104591852 1381.31