Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00138 ATGTCCATCTCGCCCACAGACGCCCAAAGATCCATATCGTCTTCGTCTCGAGCTCTCTCTCAAAATTCTAGCTTCGATTATGGACGCTGTCAAGCTTCAGAACTCGTCGATTCTCCGACCTCCGACTCCACCGACAGTCAGACCCTTGGATGGGTGCAGATCTCCCGTTCTGAATCTGTCGCCGATCTCTCAGTTGGGGTTTCTGGTTCAATCGCTGCAGCTGCAGCAGATTCTGGTGGATCTTCCAAGAAGGTGACTGAGGTAAAAACGCCAGATGGTAGGAAAAGCTCACGTCGCCAAAGCCACGGCACTTCTTCTCAGTTTCACTCGGCTGGTCGAGGAGGGATATCTTCCCAGTTCAGACGTGATAATGTTGGATCTGCTCAACCCAATGGGGAACTGTCTGGAGCTGTCAGTTCTCCACACAATCAATCAACTACGGGGTCCGTTGGTTTCCATGGCAGTGCTACACATTCAGCAGCAAGGAGAAACCAGGCGATGAATGGTAATCACTTATTGAATTTTCAATATGATCCTATTTCTCGTCCTAAATCAAGGGCTCCTCCTCCAAGAAGGCAGCAGAAGATAAAGCCGTACAATAAAGATCTATTTCTTCAGGCAAACTACAAATTTGTTGTGCTAGATTCTGGAAACTATGCATTTGAGTCAATGGATCCAGATAAAATGTTACAGTGGGAGAATGTTATCTGTGTAAGATACTCCACTCCATTACCTGTCCAGTGTCCAATTTGTTTGGAAAGTCCTCTATGTCCACAGATAACTTCATGTGGTCATATATTTTGTTTCCCTTGCATTCTGCGGTACTTGTTAATGGGCGAGGAGGATCATAAAGGTGATTGCTGGAAAAAATGTCCTCTATGTTTTATGACGATATCTTTGAAGGATTTGTACACTATCCATATTGAGAATGTTAAACAGTACCACATTGGTGATGGTATACAGTTTATGCTTCTGACTCGACCAAAAGATTCGTTAATTCCCTCACAGAAAAATCAGCGAGGTATGGACTCTTTACCATGTGGCAGTGATGACCTCTGCGATTCCTTTTCCAAGTTCACTGTAACATCAGATGTGGAGCTGTCAGTTAGAGAAGCAAAATCAGAGCTAAATGGTTGGTTAGCTAGAGCAGAATCAGGGCTTGTTGACGATTTAGAGCAGCTTCCATATGTTTGTGCCGCACTGGAACAACTAGAACAGAGAAAGAATTGTTGGACTGAGCATCAGGCTTTTAGCAGCAGCCCTCCTTTAAGAAATCATGCTACTCCTCATTCTAATATCAAGGAATGTAAATACGCTATGAAGACAGATTATCATGTGTTATCTTCAACTGCAAATGCTGATATGACTGATTCTCAAGTAAGTGGACCTGAACGTGCAATACCATTGGTCAGCCACAAGGATGAATCAAAATGGTCGGACAGTTCAACTCCAGAAAAATTGGATGAGGAATTTATGGTTCAAACTGTTGATGTGCTTGAAACACTTGAAGGCCAAGAAAGTTCGTTATCTAGTTCATATGAAGAGAGCAAAAGTTTGCAGAGGCAATTAAATGGCTCCAGACTCATAAAAGAGACGGATTCGTACACTTTCTACCAGGCAGTTGATGGTCAGCACCTCATTCTTCATCCATTAAACATGAAGTGTCTCTTGCATTATTATGGGAGCTCTGATTTGCTTCCACCCAGAATTAGTGGACATATTTTACAGTTGGAGACAGTGACTCAGTCAGAGGCCATGCGGAGGCGCTACCGCTTCTTAAGTCATTTTTCTTTAACAACAACGTTTCAGCTTTGTGAAATTGATCTGAGTGAGATATTGCCTCCTGATGCCCTGTCACCGTTTATTGATGAAATTAAGAAGCGGGAAAATCAGCGGAAACGACTTGCAAAGAAGGAACATGAAGAGAAAGTCAAGGCTGAAGCTGCTGCAATGCATGTGATGTCCATACCATCCAACTTTGGAAGTTCCTCTTATAACAACACTACATTCTCCATGGATGATTTTGAAGCTTTGGGAAGTTCTTCTGTACCCTCAACAAGCCCTCCAATAATCGGTGAAAGGAAACGGTTCTCAGATGTAACACGGCTTGGTTTTGCTGCTGGGCTCGATTCTCCATCGTTGAAAGCTGAGGAATCTGCTAATGCTTCCAGTAACATAGAAGGGAGAGGCAACACTTCTGGTTTAACTGGACAAAGGAACGGTATTACCCTTTCATTTGCTAATGTCATATCCACAGCTAAATCTGCTGAAAACCTGGAAGTCCCAAAGATGAACGGATTTGGAAAGAAAGGGAAAAAGCCGAGTCGAGTCCTCTTGTCGACTGCAGGTGGTCGGCGCTACTAA 2364 0.4357 MSISPTDAQRSISSSSRALSQNSSFDYGRCQASELVDSPTSDSTDSQTLGWVQISRSESVADLSVGVSGSIAAAAADSGGSSKKVTEVKTPDGRKSSRRQSHGTSSQFHSAGRGGISSQFRRDNVGSAQPNGELSGAVSSPHNQSTTGSVGFHGSATHSAARRNQAMNGNHLLNFQYDPISRPKSRAPPPRRQQKIKPYNKDLFLQANYKFVVLDSGNYAFESMDPDKMLQWENVICVRYSTPLPVQCPICLESPLCPQITSCGHIFCFPCILRYLLMGEEDHKGDCWKKCPLCFMTISLKDLYTIHIENVKQYHIGDGIQFMLLTRPKDSLIPSQKNQRGMDSLPCGSDDLCDSFSKFTVTSDVELSVREAKSELNGWLARAESGLVDDLEQLPYVCAALEQLEQRKNCWTEHQAFSSSPPLRNHATPHSNIKECKYAMKTDYHVLSSTANADMTDSQVSGPERAIPLVSHKDESKWSDSSTPEKLDEEFMVQTVDVLETLEGQESSLSSSYEESKSLQRQLNGSRLIKETDSYTFYQAVDGQHLILHPLNMKCLLHYYGSSDLLPPRISGHILQLETVTQSEAMRRRYRFLSHFSLTTTFQLCEIDLSEILPPDALSPFIDEIKKRENQRKRLAKKEHEEKVKAEAAAMHVMSIPSNFGSSSYNNTTFSMDDFEALGSSSVPSTSPPIIGERKRFSDVTRLGFAAGLDSPSLKAEESANASSNIEGRGNTSGLTGQRNGITLSFANVISTAKSAENLEVPKMNGFGKKGKKPSRVLLSTAGGRRY* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00138 787 MobiDBLite consensus disorder prediction 764 787 - -
Eupl04g00138 787 PANTHER RING FINGER 10 FAMILY MEMBER 73 787 IPR039739 -
Eupl04g00138 787 MobiDBLite consensus disorder prediction 175 197 - -
Eupl04g00138 787 SMART ring_2 248 294 IPR001841 -
Eupl04g00138 787 MobiDBLite consensus disorder prediction 74 159 - -
Eupl04g00138 787 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 329 IPR013083 -
Eupl04g00138 787 ProSitePatterns Zinc finger RING-type signature. 263 272 IPR017907 -
Eupl04g00138 787 MobiDBLite consensus disorder prediction 30 49 - -
Eupl04g00138 787 Pfam Zinc finger, C3HC4 type (RING finger) 248 294 IPR018957 GO:0046872
Eupl04g00138 787 MobiDBLite consensus disorder prediction 1 24 - -
Eupl04g00138 787 CDD RING-HC_RNF10 246 303 - -
Eupl04g00138 787 MobiDBLite consensus disorder prediction 716 738 - -
Eupl04g00138 787 ProSiteProfiles Zinc finger RING-type profile. 248 294 IPR001841 -
Eupl04g00138 787 MobiDBLite consensus disorder prediction 120 159 - -
Eupl04g00138 787 MobiDBLite consensus disorder prediction 100 114 - -
Eupl04g00138 787 SUPERFAMILY RING/U-box 247 301 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00138 57 717 C3H Transcription Factor Family AT3G26730 50.661 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00138 K26979 - ming:122078998 962.214