Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00131 ATGCCATCTAAAATAATGGATCAAAGGAGTTTGTCTCCATCATCCTACTTCTACGAAGAAATCTGTTTTCCTCCCGAGAGGCAAGTTGGATTTTGGAAGCCCGAATCCATGCCTGATCACCATGGAATGGATGCAATGGCACGAACACCAGGAAGCAAGTCAGTTGTTTCATCACCACTGGAGAAACTTCTACCAGTGGGAACACAATCAATGGAGTGCTTGGAACTTCCTCAGCCTTATCTAATGAGAGACCATAAAGCCAAGTTTAGCCTAGAGCGGCATGCGGTGGGAGCAGAGAGAACAACCAACCTGTCCACGACTTCTTGGAGGAGATCTGCAGACCACGATCTAGGAACAAGGTCAAATATATCTGTGCAGCCAGCATCCCATTTTGTGGAGGGCAACAAGGTTGATATGAATGGAGCCCAATATGAGAATGGTCTCTTCTCGAGTTCCTTGTCAGAAATATTTAATAAAAAGATGAGATTATCATCAAATAATGTTCTGTTCGGCCAGTCTGTCGATGCTGTTACCTCGCACTATGAGGAAGAGGAACCTTTTGAATCACTTGAAGAAATTGAGGCCCAGACCATTGGGAACCTCCTTCCTGATGATGATGACTTGCTATCTGGAGTGATCAATGAGTTCGAGTATATTGCTCAACCCAATAATGGAGATGATATAGAAGATTTTGATCTGTTTAGCAGTGGCGGAGGGATGGAACTAGAAGGAGATGATGGGGGCCAAAGAAATTCAGATTTTGCTGGGGGAATTTGTAATGGTCTGCAGGGGGGATTGAATGGCTCAATTGCTGGGGAACACCCTTATGGTGAACACCCTTCTAGAACACTTTTTGTGAGAAATATCAATAGCAGTGTTGAAGATTCGGAGCTAAGGGTTATTTTTGAGCAATATGGAGATATCCGCACTCTTTATACGGCCTGCAAGCACCGTGGTTTTGTTATGATTTCTTATTATGATATAAGGGCAGCACGCAATGCCATGAAAGCACTTCAAAACAAGCCGTTGAGACGTAGGAAGCTTGACATACACTTCTCAATTCCAAAGGATAACCCTTCAGAGAAAGATATTAACCAGGGCACCCTCGTGGTCTTCAATCTTGATTCTTCTGTTTCAAATGATGAGCTGCGCCATATTTTTGGTGTGTATGGAGAAATTAAGGAGATCCGTGAAACTCCACACAAGCGTCATCACAAATTCATAGAGTTTTACGATGTTAGAGCTGCAGAATCTGCTCTTCGTGCATTGAACAGGAGTGATATTGCAGGGAAGCAGATTAAGCTCGAACCAAGCCGCCCCGGGGGTGCAAGACGGTGTTTGATGCAACAGTTCTCTCCCGAGCTGGACCAGGAGGAATCCAGTGTGTGTCGACAACAGGGAAGCCCTCCTAATAACTCACCATCAGGATGCTTTGGTATGTTTTTTGCCTGA 1452 0.4456 MPSKIMDQRSLSPSSYFYEEICFPPERQVGFWKPESMPDHHGMDAMARTPGSKSVVSSPLEKLLPVGTQSMECLELPQPYLMRDHKAKFSLERHAVGAERTTNLSTTSWRRSADHDLGTRSNISVQPASHFVEGNKVDMNGAQYENGLFSSSLSEIFNKKMRLSSNNVLFGQSVDAVTSHYEEEEPFESLEEIEAQTIGNLLPDDDDLLSGVINEFEYIAQPNNGDDIEDFDLFSSGGGMELEGDDGGQRNSDFAGGICNGLQGGLNGSIAGEHPYGEHPSRTLFVRNINSSVEDSELRVIFEQYGDIRTLYTACKHRGFVMISYYDIRAARNAMKALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDSSVSNDELRHIFGVYGEIKEIRETPHKRHHKFIEFYDVRAAESALRALNRSDIAGKQIKLEPSRPGGARRCLMQQFSPELDQEESSVCRQQGSPPNNSPSGCFGMFFA* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00131 483 FunFam MEI2-like protein 5 isoform 2 271 365 - -
Eupl04g00131 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 348 IPR000504 GO:0003723
Eupl04g00131 483 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 369 434 IPR000504 GO:0003723
Eupl04g00131 483 CDD RRM2_MEI2_like 366 436 - -
Eupl04g00131 483 Gene3D - 271 365 IPR012677 -
Eupl04g00131 483 Gene3D - 366 461 IPR012677 -
Eupl04g00131 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 367 440 IPR000504 GO:0003723
Eupl04g00131 483 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 355 IPR000504 GO:0003723
Eupl04g00131 483 PANTHER RNA RECOGNITION MOTIF-CONTAINING 105 472 - -
Eupl04g00131 483 FunFam Protein MEI2-like 1 366 461 - -
Eupl04g00131 483 SUPERFAMILY RNA-binding domain, RBD 279 441 IPR035979 GO:0003676
Eupl04g00131 483 CDD RRM1_MEI2_like 281 357 IPR034453 -
Eupl04g00131 483 SMART rrm1_1 368 436 IPR000504 GO:0003723
Eupl04g00131 483 SMART rrm1_1 283 351 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00131 Eupl-Chr4 2220543 2224874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00131 279 433 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 1.90e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00131 - - ming:122077009 770.385