Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00122 ATGATCCTTCCTCTCACAACCCCCTGTGCTCACAACTTTTGCAAGTCATGTTTGGAGGGTGTCTTTGCTGGGCAGACTTTTGTTAGAGAGAGGACTTGTGAGGGGAGACGGACACTCCGAGCCCAAAAGAATGTTATGAAGTGCCCGTCTTGCCCCAACGACATCTCGGACTTCCTTCAAAACCCACAGGTTAATAGAGAGTTGATGGATGTGATTGAATCTCTACAACGGAAAACTGAGGAGACTCAGGAGATTGTTGAGGATTCAAGTGAAGAAAATGAGAGCACGGAGGACAAGCTCGAAGCTATGGTGGTTGCTGACACTGAAGATAGCACTGAAAGTACTGAAATTCTGGAAAATGGTGAGAAAGATGTACAAGATTCACCAACTGAGAGCGAATCTAAGCGCACATACAAGAGGAAGAAATATGAAATTGGGGATTGCTTGCCAAAGCCTGCCGGTGGTGAGGAAAGTGAAAAATCTGTAATGAAGGAGAAGAAACCTGATGGAGACACTGAAGTAAATGCTGAAGTGCCAGAAAGTGGCAAGGACTTGCAAACTCCTACAACTGAGAGCAAACCTAAGCAGACTTACAAGCGGAAGAAAGCTAACGATGGGGATTGCACAACCGGGCAGAATGGTGGGGTGAGGACCAGGAGCAAGAAATCTGAAGAGGTGGCAGATGAAGGAAATGATTCACCATCAAGCCCACTCCATGTTCGATCGGACGATGATGACTTTGAATGA 747 0.4632 MILPLTTPCAHNFCKSCLEGVFAGQTFVRERTCEGRRTLRAQKNVMKCPSCPNDISDFLQNPQVNRELMDVIESLQRKTEETQEIVEDSSEENESTEDKLEAMVVADTEDSTESTEILENGEKDVQDSPTESESKRTYKRKKYEIGDCLPKPAGGEESEKSVMKEKKPDGDTEVNAEVPESGKDLQTPTTESKPKQTYKRKKANDGDCTTGQNGGVRTRSKKSEEVADEGNDSPSSPLHVRSDDDDFE* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00122 248 MobiDBLite consensus disorder prediction 116 178 - -
Eupl04g00122 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 92 IPR045134 -
Eupl04g00122 248 ProSitePatterns Zinc finger RING-type signature. 9 18 IPR017907 -
Eupl04g00122 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 107 IPR013083 -
Eupl04g00122 248 SUPERFAMILY RING/U-box 3 77 - -
Eupl04g00122 248 Coils Coil 65 99 - -
Eupl04g00122 248 MobiDBLite consensus disorder prediction 78 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00122 Eupl-Chr4 2052332 2053805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00122 1 82 C2H2 Transcription Factor Family AT5G39550 60.976 1.83e-29 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00122 K10638 - nnu:104591868 237.654