Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00121 ATGGCGCATAATAGCCAACTCCCCTGCGACGGAGACGGCATTTGCATGCTCTGCAAGAAAAAACCCTCAGACGAAGAGACGCTCACTTGCAAAACCTGCGTCACCCCTTGGCACGTAAACTGCCTCTCTGCCCCTCTCGAAAATCTAGCTTCCGTTCTCCAATGGGAGTGCCCTGACTGTTCTCCGATGTCCGGCGACACTCCGGCACGGTTTTCTGGACAATCGGTTGTCTCCGGCATCACTGCAACTTCAGGCGACCTGATCGCTGCGATTCGAGCGATCGAAGCAGACGAATCGTTGACGGAGCAGGAGAAGGCGAAGAAGCGGCAGGAGCTTATGAGCAGAGGGGCTCGATCGCCGGATCTCGACGAGGCGAAATCGAAAACGAAAGGAGAAAACGATGTTCTTGATCTTCTCGACGAAAGTTTGAACTGCTCGTTTTGTATGCAGTTGCCGGAGAGACCTGTTACGACACCATGTGGGCACAATTTCTGCCTCAAATGCTTCCAGAAATGGATTGGGCAGGGGAAACGCACCTGCGCAAAGTGCCGCAATGCCATCCCTTCCAAGATGGCTAGTCAACCCCGTATCAACTCGGCTCTTGTTGTCGCCATTCGTATGGCCAAGATGTCAAAATCTATTGCCACTGGGGGGCAGCTGAAAGAATACCATTGTGTACACAATGAAAACCGACCGGACAAAGCGTTCACTACAGAACGGGCAAAGAAAGCTGGAAAGGCTAATGCTTGCAGCGGGAAGATCTTTGTAACAGTTGCGCCTGACCATTTTGGACCAATCCTTGCGGAAAATGACCCGGATAGAAAGCAGGGTGTGTTGGTTGGGGAGTGTTGGGAGGATCGGATGGAATGCAGGCAATGGGGGGCCCACTTACCCCATGTCGCTGGGATTGCTGGGCAATCGGAGTACGGTGCGCAATCGGTGGCACTCTCGGGAGGCTATGAGGACGACGAGGATCATGGCGAGTGGTTCCTCTACACAGGAAGTGGGGGAAGAGACCTTAGCGGGAATAAGCGGACAAACAAAGAGCAGTCCTTTGATCAAAAGTTTGAGAAATTGAACGAGGCGCTGCGGGTTAGTTGCAAGAAAGGTTATCCTGTTCGAGTTGTGAGGTCCCACAAGGAGAAGCGTTCTGCCTATGCCCCAGAAACTGGAGTACGATACGATGGAATTTACAGGATAGAGAAATGTTGGCGAAAAATTGGAATTCAGGGCTTTAAGGTCTGCAGATATCTGTTTGTTCGATGCGACAATGAACCTGCACCGTGGACAAGTGATGAACATGGAGACCGACCTAGACCTTTGCCTGTCATTAAAGAGCTAAAGAAGGCAACTGATATTACAGAAAGGAAGGATAGCCCGTCTTGGGATTATGATGAGGAAGAAAGTAGTTGGAGATGGAAAAGGCCTCCTCCTCTCAGCAGAAAAACTTTGGACACTGGAAATCCAGAAGACAGGAAGAGATCTAGGAGAGCCATAAGGCAATCACAGAACTTGTCCTGTACGGGATAA 1530 0.5085 MAHNSQLPCDGDGICMLCKKKPSDEETLTCKTCVTPWHVNCLSAPLENLASVLQWECPDCSPMSGDTPARFSGQSVVSGITATSGDLIAAIRAIEADESLTEQEKAKKRQELMSRGARSPDLDEAKSKTKGENDVLDLLDESLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKRTCAKCRNAIPSKMASQPRINSALVVAIRMAKMSKSIATGGQLKEYHCVHNENRPDKAFTTERAKKAGKANACSGKIFVTVAPDHFGPILAENDPDRKQGVLVGECWEDRMECRQWGAHLPHVAGIAGQSEYGAQSVALSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKLNEALRVSCKKGYPVRVVRSHKEKRSAYAPETGVRYDGIYRIEKCWRKIGIQGFKVCRYLFVRCDNEPAPWTSDEHGDRPRPLPVIKELKKATDITERKDSPSWDYDEEESSWRWKRPPPLSRKTLDTGNPEDRKRSRRAIRQSQNLSCTG* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00121 509 ProSiteProfiles YDG domain profile. 273 421 IPR003105 -
Eupl04g00121 509 Pfam Zinc finger, C3HC4 type (RING finger) 145 183 IPR018957 GO:0046872
Eupl04g00121 509 SMART G9a_1 268 425 IPR003105 -
Eupl04g00121 509 CDD RING-HC_ORTHRUS_rpt1 141 188 IPR047498 -
Eupl04g00121 509 SMART ring_2 15 60 IPR001841 -
Eupl04g00121 509 SMART ring_2 145 183 IPR001841 -
Eupl04g00121 509 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Eupl04g00121 509 Gene3D - 244 442 IPR036987 -
Eupl04g00121 509 MobiDBLite consensus disorder prediction 452 498 - -
Eupl04g00121 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 212 IPR013083 -
Eupl04g00121 509 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Eupl04g00121 509 ProSiteProfiles Zinc finger RING-type profile. 145 184 IPR001841 -
Eupl04g00121 509 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 244 439 - -
Eupl04g00121 509 SUPERFAMILY PUA domain-like 247 442 IPR015947 -
Eupl04g00121 509 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 4 502 IPR045134 -
Eupl04g00121 509 MobiDBLite consensus disorder prediction 99 130 - -
Eupl04g00121 509 SMART PHD_3 14 61 IPR001965 -
Eupl04g00121 509 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 93 212 - -
Eupl04g00121 509 SUPERFAMILY RING/U-box 136 191 - -
Eupl04g00121 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 82 IPR013083 -
Eupl04g00121 509 MobiDBLite consensus disorder prediction 452 509 - -
Eupl04g00121 509 Pfam SAD/SRA domain 276 424 IPR003105 -
Eupl04g00121 509 SUPERFAMILY FYVE/PHD zinc finger 4 65 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00121 Eupl-Chr4 2045946 2051641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00121 1 498 C2H2 Transcription Factor Family AT5G39550 64.400 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00121 K10638 - nnu:104591868 882.863