Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00110 ATGTTTGCATTCTCAAGCCATCTCCTTTCTAGGCATTGTTTGGGAAGCGTAACTATGGGTGCTTTTTGTTGCTGTCCATGTGGCGAGGAGTTTGAAGAATATGCTCATCCAAGTAGTTCCATATATAGGCACTGCATATGTCTAAGATACTTCCTCAATCAGCTATTCAGTGGGTCCAGTGCAACGTTTCATAGACTTGAAGGACGATCCGTTGCATCACCAATCCAAGGGACTACTTCTTTGGCAACAACAGGGCTGGGCTCAACAGTACCTGACAGTTCCTTAACTGACACACACCATTTTGTCCCCAGACCAATGCCATATGATGCTGATCAAAGGTATACCCGCTTGCAGCGTGATGGATTGGTCTTGAGGCGTGAAAAGTCTGTGAGCCATTTACAAGAGGAGTCACAACCACTTAGAAGAAGCAATAGTAGCTCTGGTGTAGAACCATTGGGTGCAGGGAGGAAGTGGAATGGAGTTGATTCTGAAGAAGATTGTAAAACTGGACGATCAGAGTCCTTAGAGAAGACTTTATCCGCAAAAGTTCCATATGGACTAGCATATATGGTACCATCTTCTGAGGATGAAGATGTCTGCCCTACATGTCTGGATGAATATACTCCTGAAAATCCTAAGATCATCACGCGATGCTCCCATCATTTTCACCTCAGTTGTATATACGAGTGGATGGAAAGAAGTGAAAGTTGTCCACTTTGCGGCAAGGTGCGTACTGGACTACTCTCTATTTGTATTATCCATGGAAATTTATGTTTTAAATATGAACTTTGGCTTTTTTATTATTGGAAAAAGTAG 816 0.4277 MFAFSSHLLSRHCLGSVTMGAFCCCPCGEEFEEYAHPSSSIYRHCICLRYFLNQLFSGSSATFHRLEGRSVASPIQGTTSLATTGLGSTVPDSSLTDTHHFVPRPMPYDADQRYTRLQRDGLVLRREKSVSHLQEESQPLRRSNSSSGVEPLGAGRKWNGVDSEEDCKTGRSESLEKTLSAKVPYGLAYMVPSSEDEDVCPTCLDEYTPENPKIITRCSHHFHLSCIYEWMERSESCPLCGKVRTGLLSICIIHGNLCFKYELWLFYYWKK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00110 271 MobiDBLite consensus disorder prediction 136 150 - -
Eupl04g00110 271 FunFam RING/U-box superfamily protein 154 245 - -
Eupl04g00110 271 Pfam RING-H2 zinc finger domain 197 240 IPR024766 GO:0008270
Eupl04g00110 271 SUPERFAMILY RING/U-box 195 243 - -
Eupl04g00110 271 CDD RING-H2_AIRP1-like 196 243 - -
Eupl04g00110 271 SMART ring_2 200 240 IPR001841 -
Eupl04g00110 271 ProSiteProfiles Zinc finger RING-type profile. 200 240 IPR001841 -
Eupl04g00110 271 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 86 243 - -
Eupl04g00110 271 MobiDBLite consensus disorder prediction 159 173 - -
Eupl04g00110 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 245 IPR013083 -
Eupl04g00110 271 MobiDBLite consensus disorder prediction 128 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00110 Eupl-Chr4 1859899 1864719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00110 19 243 C3H Transcription Factor Family AT5G15790 47.826 1.29e-61 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00110 - - nnu:104592732 372.089