Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00109 ATGGGTTTCCCTTGTGTTGGCATTAAAGTGGCAAAACTTGTAACAGTCCTACTAAACCTCCTAGCCCAAGTTAAGTTCATGGTCATGGTGGCACTCTTTCATCTGGGTCTACTCAATCCGCCGGATCAAGCGTATTCTTGGGGACGTCACGCCGATTCTGCGATATCGAGGAATGTTCCGTCTTTGGCATCGCTTCCAGTCCCATCGACAATTGTGAGTCCTCTTATGTTGGAGACAATTAAGAAGGCGCTTCCAGTGGTAGAATTTGCTGATTTTATCGAAAGATCGGGGATGAGCGATGACTCTGAGGCGGTTTGCGCCGTGTGCTTGAGTTGCTTAGAGAGAAACCATGAGATCAGAGAGCTATCAAATTGTTCTCATGTTTTCCATAGAGAGTGCTTGGATAAGTGGATGGATGAAAGTCAGGTGACATGCCCTTTGTGTAGATCTAAACTACTGCCCTCTCAAGAAGAGGAGATGAAGGGTGGAGATGATCCATGGATGGTTCAGAGGATCACCTACCTATTTGGTGAGGATTGGTGA 543 0.4659 MGFPCVGIKVAKLVTVLLNLLAQVKFMVMVALFHLGLLNPPDQAYSWGRHADSAISRNVPSLASLPVPSTIVSPLMLETIKKALPVVEFADFIERSGMSDDSEAVCAVCLSCLERNHEIRELSNCSHVFHRECLDKWMDESQVTCPLCRSKLLPSQEEEMKGGDDPWMVQRITYLFGEDW* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00109 180 SMART ring_2 106 148 IPR001841 -
Eupl04g00109 180 SMART ringv_2 105 149 IPR011016 GO:0008270
Eupl04g00109 180 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Eupl04g00109 180 SUPERFAMILY RING/U-box 87 155 - -
Eupl04g00109 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 154 IPR013083 -
Eupl04g00109 180 Pfam Ring finger domain 106 149 IPR001841 -
Eupl04g00109 180 PANTHER RING ZINC FINGER PROTEIN-RELATED 39 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00109 Eupl-Chr4 1854426 1855272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00109 78 179 C3H Transcription Factor Family AT3G43430 46.364 1.00e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00109 - K16281 ming:122060008 213.772