Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00103 ATGGGGGTCTTGTGCTTTCTGGTCTTGTGTTCAATGGTTTGCGCTTCTCAAGCGGTTAGTTCTGTTTCTAACGACGCAATGTCCCTTCTCACCTTCAAGAACTCTGTTTCTCTCGATCTGTCCAACCTTCTTTCCGACTGGAATCCGGCGAAAAACCACTGCCTTTGGTCCGGAGTCACATGCGATAGAGTTTCCGGCAGAGTAACGTCTTTGAACATCGCCGGAAGTATGACTTCTCGGTCGCCGGAATCAGGCTACAATATTACCGGGAAAGATTCTCTGCTCTCCGGAACCCTTCCACCTGCGGTCGGAAACCTCACCGAGCTTCGTATTCTGTCTATACCTTACAATGCCTTCTACGGCGAGATTCCAGTGGAGGTCGGAAGACTTCGGTCTCTGGAGATTCTCAAGCTTCAAGGAAATAACTTCTCAGGCCGGATTCCCGACCAGATAAGCAATCTCTCGTCTCTTCGAGTGCTTAATTTATCTTATAATTTATTTTCCGGTCCGATTCCAGAGAAACTGATCGGTTTTGCTAGAATCAGAGCTATTGATTTATCGTATAATAAGCTTAGTGGTGTGATTAGGGTTGATTCTTCCAGTAGATGTGAGTCTCTTATTCATTTGAAGCTTTCTGGTAACTTTTTGGTGGATAAGATTCCGCCACAGATCGGAAACTGCTCAAATCTGAGATCTCTTTTGCTTGATGGGAACATTCTCGAAGGTCGGATTCCGGTAGAAATTGGCCGGATTTCTGAACTTCGGATTCTTGATGTTTCTAGAAACAGTCTCACTCATAGGATCCCGAAAGAGCTGGCGAATTGCAGGAAGCTGTCTGTTCTTGTGTTGACGAAATTGGTTGCTTTCGAGTCTGCCGATGATAACTTGGCAGAAAGTGCTAGGGAAGAATTCAATGCTTTTGTGGGAGAAATTCCTTCCGAGATATTGTTGATTCCCAACCTTGAGGTTTTCTGGTCACCTCGAGCGAATCTTCGTGGTCAATTGCCGAATAATTGGAACGATTCGTGTAAACTGCAAGTACTCAATCTGGGGCAGAATTATATAACCGGTCTGATACCAGAAAGTATGGGATTGTGTAAAAATCTTTCTTTTCTAGATTTGAGTTCAAATGGTTTGCAGGGATCCCTCCCTTCACAGCTACAAGTTCCATGTATGGTTTACTTTAACATCAGTCGCAATTCGTTTTCTGGTTCTCTACCGAAATTCGCAAAGAGTAGTTGCATTAACAGTATGATCTCATATAGTCAAGACAGTAGTTTCTTTGAGAAGGAAAATATAGAGAACACCTACTTTGCAGATCCTCTTTGGGGTTCTCGGATGAATAAGCCATTGTTGGATGAAGGTTTCATAGTTATCCATGATTTTAGTTGGAATAGCTTTATTGGTTCACTACCAGTGTTCTCTTTTGGGGATGGTTTCTTACCGACCGATCGTAAACCCTCATACAGGCTGTTACTGAACAATAATCAATTTAATGGGTCTTTACCAGGTGAGCTTTTCTCAACCTGTATAGATCTACACAGCTTTGCAGTTAATTTGAGTGTCAATCAGATATCAGGTGGGATTTCTCAGGGCTTGCTTCTTGACTGCTTGCAGCTAACGGGTTTCGAAGCAGCTTACAATCAGATTGGTGGGTCAATTCCTTCTGGTATTGGTGATGCACAAATGCTTCAATGTCTTGACTTAAGAAGAAACAGGCTGATGGGTTCCCTGCCCGACCAGTTGGGCAAATTGAAGGATCTGAAATGGCTTCTTCTGGGTGGGAATCGTTTAACAGGAGATATCCCTACTCAGCTTGGTCAATTGGCTTCTCTTACAGTTTTGGATCTATCTGGAAATGCTCTAACGGGATCTATCCCTGCAAGTTTGGCAAATTCCACTAACCTTGAAGCGTTGTTTCTTGATCACAACAAGCTTTTGGGGGAGATCCCTTCATCATTCTCGACTCTTGCCAGTCTAATTAAACTGGATGTTTCTTTCAACAACCTTACTGGTTATATACCCTATCTTCAACACTTGAACAACTGTGAAGGCTTCAAAGGAAATAACTTCCTGCAGCCATGCCCTGATCCAAACTCAGTAACCCCAACTGGGCTTCCAGTCCCACTTGAAGTGCATAAATGGCGTAGTCGAAAAAGTCAACTAAAGAAATTTGTGATTGCAATGGTGGCTTCTGCATCTTTCATACTCCTTATTCTCCTACTGATGATTCTATTCCTAGTTTTTGGAAGGAGAAAGCTTGGTAGACTCGCCAGCCTAAGAAGGAAAGTAGTTGTGACATTTACAGATGTTCCAACTGAGCTGACTTACGATAATGTGGTTAGAGCAACAGGGAATTTCAGCATTCGGAACCTGATTGGCACGGGTGGTTTCGGGGCAACTTACAAGGCAGAGTTGGTCCCAGGTTTCCTAGTAGCTGTGAAGAGGCTTTCTATAGGCAGATTTCAAGGCATTCAACAGTTTGATGCAGAGATCAGAACTTTAGGAAGGATTCGACATAAGAACCTTGTAACTCTTATTGGGTATCATATGGGAGAAGCTGATATGTTCTTGATCTATAATTATCTCTCAGGTGGAAATCTTGAAACCTTCATCCATGACAGATCAGGTGAAAATGTAAGGTGGCCGGTGATTCACAGGATAGCTTTAGACATAGCACAGGCACTAGCTTATCTTCACTATTCTTGCGTTCCACGGATAGTTCATCGGGACATCAAGCCTAGCAACATCTTGCTCGATGAGGAGCTTAACGCATACCTTTCAGATTTCGGATTGGCAAGGCTTCTAGAAGTTTCTGAGACTCATGCCACTACAGATGTGGCCGGCACATTCGGATATGTGGCACCTGAGTACGCTACCACATGCAGGGTGTCCGACAAGGCAGACGTTTATAGCTTTGGTGTTGTGCTCTTGGAATTGATGTCAGGGAAGAGGTCTCTTGACCCATCGTTCTCTGAATACGGGAATGGGTTCAATATAGTAGCATGGGGGAAGATGTTGATCAAGGAGGGGCGTTCGTCTGAGCTTTTCTCTCCAGAGCTGTGGGAAGCAGGGCCCAAGGAGAATTTGTTGGGGATGTTAAGGCTTGCATCAGCCTGCACGGTGGAGTCACTTGCTGTTCGGCCGTTGATGAAGCAGGTTTTAGAGAAATTGAAACAGTTGGGCAATTCCTGA 3195 0.441 MGVLCFLVLCSMVCASQAVSSVSNDAMSLLTFKNSVSLDLSNLLSDWNPAKNHCLWSGVTCDRVSGRVTSLNIAGSMTSRSPESGYNITGKDSLLSGTLPPAVGNLTELRILSIPYNAFYGEIPVEVGRLRSLEILKLQGNNFSGRIPDQISNLSSLRVLNLSYNLFSGPIPEKLIGFARIRAIDLSYNKLSGVIRVDSSSRCESLIHLKLSGNFLVDKIPPQIGNCSNLRSLLLDGNILEGRIPVEIGRISELRILDVSRNSLTHRIPKELANCRKLSVLVLTKLVAFESADDNLAESAREEFNAFVGEIPSEILLIPNLEVFWSPRANLRGQLPNNWNDSCKLQVLNLGQNYITGLIPESMGLCKNLSFLDLSSNGLQGSLPSQLQVPCMVYFNISRNSFSGSLPKFAKSSCINSMISYSQDSSFFEKENIENTYFADPLWGSRMNKPLLDEGFIVIHDFSWNSFIGSLPVFSFGDGFLPTDRKPSYRLLLNNNQFNGSLPGELFSTCIDLHSFAVNLSVNQISGGISQGLLLDCLQLTGFEAAYNQIGGSIPSGIGDAQMLQCLDLRRNRLMGSLPDQLGKLKDLKWLLLGGNRLTGDIPTQLGQLASLTVLDLSGNALTGSIPASLANSTNLEALFLDHNKLLGEIPSSFSTLASLIKLDVSFNNLTGYIPYLQHLNNCEGFKGNNFLQPCPDPNSVTPTGLPVPLEVHKWRSRKSQLKKFVIAMVASASFILLILLLMILFLVFGRRKLGRLASLRRKVVVTFTDVPTELTYDNVVRATGNFSIRNLIGTGGFGATYKAELVPGFLVAVKRLSIGRFQGIQQFDAEIRTLGRIRHKNLVTLIGYHMGEADMFLIYNYLSGGNLETFIHDRSGENVRWPVIHRIALDIAQALAYLHYSCVPRIVHRDIKPSNILLDEELNAYLSDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGKRSLDPSFSEYGNGFNIVAWGKMLIKEGRSSELFSPELWEAGPKENLLGMLRLASACTVESLAVRPLMKQVLEKLKQLGNS* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00103 1064 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Eupl04g00103 1064 SMART LRR_typ_2 609 633 IPR003591 -
Eupl04g00103 1064 SMART LRR_typ_2 130 153 IPR003591 -
Eupl04g00103 1064 SMART LRR_typ_2 251 275 IPR003591 -
Eupl04g00103 1064 SMART LRR_typ_2 154 178 IPR003591 -
Eupl04g00103 1064 SMART LRR_typ_2 657 679 IPR003591 -
Eupl04g00103 1064 Gene3D Transferase(Phosphotransferase) domain 1 863 1062 - -
Eupl04g00103 1064 SUPERFAMILY Protein kinase-like (PK-like) 766 1058 IPR011009 -
Eupl04g00103 1064 Gene3D Ribonuclease Inhibitor 150 199 IPR032675 -
Eupl04g00103 1064 Gene3D Ribonuclease Inhibitor 24 149 IPR032675 -
Eupl04g00103 1064 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 752 862 - -
Eupl04g00103 1064 PRINTS Leucine-rich repeat signature 369 382 - -
Eupl04g00103 1064 PRINTS Leucine-rich repeat signature 609 622 - -
Eupl04g00103 1064 SMART serkin_6 787 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00103 1064 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 863 1064 - -
Eupl04g00103 1064 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 199 287 - -
Eupl04g00103 1064 Gene3D Ribonuclease Inhibitor 200 293 IPR032675 -
Eupl04g00103 1064 Pfam Leucine rich repeat 131 191 IPR001611 GO:0005515
Eupl04g00103 1064 Pfam Leucine rich repeat 588 646 IPR001611 GO:0005515
Eupl04g00103 1064 Pfam Protein kinase domain 789 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00103 1064 FunFam Leucine-rich repeat receptor-like protein kinase 22 197 - -
Eupl04g00103 1064 Pfam Leucine Rich Repeat 344 362 IPR001611 GO:0005515
Eupl04g00103 1064 Pfam Leucine Rich Repeat 254 275 IPR001611 GO:0005515
Eupl04g00103 1064 SUPERFAMILY L domain-like 308 684 - -
Eupl04g00103 1064 Gene3D Ribonuclease Inhibitor 294 432 IPR032675 -
Eupl04g00103 1064 ProSitePatterns Protein kinases ATP-binding region signature. 793 815 IPR017441 GO:0005524
Eupl04g00103 1064 Gene3D Phosphorylase Kinase; domain 1 752 862 - -
Eupl04g00103 1064 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 483 702 - -
Eupl04g00103 1064 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 182 1060 - -
Eupl04g00103 1064 SUPERFAMILY RNI-like 95 409 - -
Eupl04g00103 1064 ProSiteProfiles Protein kinase domain profile. 787 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00103 1064 CDD STKc_IRAK 793 1061 - -
Eupl04g00103 1064 Gene3D Ribonuclease Inhibitor 455 698 IPR032675 -
Eupl04g00103 1064 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00103 Eupl-Chr4 1790348 1793542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00103 3 1061 Receptor kinase-like Gene Family AT3G02130 45.311 0.0 863
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Eupl04g00103 Pkinase 3.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00103 - - vvi:100258356 1513.05