Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00100 ATGCAAAGATCCAGTTCAAACAGGAGGGAAATCAATCAAGATCTTGAGCTAAGATTAGGGCCTTCTTATCCGCCTAAAGGAGATATGTTGGCCAGAAACTATGGGAGGGGTTTCCCCACTCTAATCACCATTGAAGATGACGATGACGATGATGTGCTAATGTATTCTCCGAGTCAGAGGTCTTCATCAGGGGCAATGGGGTTGTTTCCCATTTCGAGTTCATGGGTACCTGTTGCACCTGTTATAACTGAAGAAGATTTAGAACTTCGGCTTGGATCCAGAGCGCATAATGGAGCTGTTGGTCGCAATCCCAATGGAAGTGGAGATCCCTTGCATACTTGGAAATGTGTCAAGGCAAAGTATGGACTAGCTTCAAGCAGCATGCAACATGCGATCCAGGTGGAGGGTGAGGGTGTAAAACTGAGATGCACAATCTGCATGGATACAATGAAGGAGGAGACATCCACTGTGTGTGGGCATTTGTTCTGCAAGTCCTGCATTACGGATGCCATTCGAGCCCAGAACAGGTGCCCCACCTGCCGGAAGGAACTCTCAATTGGCAACATTCACCGCATCTATCTCCCAGGAGCCACTTCCTGA 600 0.48 MQRSSSNRREINQDLELRLGPSYPPKGDMLARNYGRGFPTLITIEDDDDDDVLMYSPSQRSSSGAMGLFPISSSWVPVAPVITEEDLELRLGSRAHNGAVGRNPNGSGDPLHTWKCVKAKYGLASSSMQHAIQVEGEGVKLRCTICMDTMKEETSTVCGHLFCKSCITDAIRAQNRCPTCRKELSIGNIHRIYLPGATS* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00100 199 PANTHER ELFLESS, ISOFORM B 3 195 - -
Eupl04g00100 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 195 IPR013083 -
Eupl04g00100 199 ProSiteProfiles Zinc finger RING-type profile. 143 181 IPR001841 -
Eupl04g00100 199 SMART ring_2 143 180 IPR001841 -
Eupl04g00100 199 MobiDBLite consensus disorder prediction 1 23 - -
Eupl04g00100 199 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 - -
Eupl04g00100 199 SUPERFAMILY RING/U-box 137 186 - -
Eupl04g00100 199 ProSitePatterns Zinc finger RING-type signature. 158 167 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00100 Eupl-Chr4 1758849 1763444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00100 137 195 C3H Transcription Factor Family AT3G07200 45.763 4.55e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00100 K22651 - psom:113281211 251.906