Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00098 ATGTCAAGGACTCTTGCAGTATTACTTGGAGGTGCTGCAGGAGCCATGACATTGGTGGGGATAGTAATTATATTTCTATGGTTCTGCCAATCTCGTAATTGGAGAATTTCGAGAACTTCTGAGACAGGTTCCTCAGATCCATCTGTTCAAGTAGGAAGAAACATTGGGGTTGAGTTGTCTTTAACAAGGGGTAGATCTCATCCACCTGATTCACGGGAAGCCAGGTGTTTTCTGATGGAAGAATTGGTTCAAGCGACAAAGAATTTTAATGATATAAATTTAATCGGGGAAGGAAAATTTGGGGAGGTGTATAAGGGTTTGCTTAATGATGGGTTGATCGTGGCCATTAAAAAGCGGCCTGGTGCTCCTAATCAGGAATTTATCGAAGAGGTACGCTATCTCTCATCTATTCATCATCGAAATCTTGTGAGTCTTTTGGGTTACTGCCAGGAAAACAATCAACAAATGCTTATCTACGAGTATATCCCAAATGGAAGTGTTTCCAGTCACTTATATGGTGCAGGTCAGATTTCTCATGAGAAGCTAGAATTCAAGCATAGGCTTCCTATAGCTCTCGGGGCAGCTAAAGGTTTGGCTCACCTTCATGCCCTAAGTCCTACTTTGGTACATAAGAATTTCAAAACAGCCAATGTCCTCGTAGATGAAAATTTCATACCTAAGGTTGCGGATGCGGGGCTCCGCAACTTACTTGGTAGAGTTGATGTTGCAGGTCCATCCTCTCATTTGGTGGCTGACGATATATTCCTTGCTCCAGAGGTGAGAGAGTTCAGGAGATTCTCAGAAAGAAGTGACGTATATAGTTTTGGAGTATTCCTGCTGGAGTTGGTAAGCGGGCGGGAAGCTATGCAATCGCAGTCTTCAGAATCTGCTCAAAGCTTGGTCGAATGGGTGCAAAATTATCATGACTTGAGCAACATTTCTACCATCATTGATCATCGGTTGGGCAACAGTTTCACAACCGAAGGCATGAAAGAATTCATACAGCTGACAGTTAGGTGTGTTGACCCCTCTAGTGAGAGGCGACCTACCATGAATTATGTGGTATCAGAACTCGATCGGATACTCGAGAAAGAAATGAGCTTGACGACTATAATGGGAGAAGGCACCACGATTGTGACCCTCGGAAGCCAGCTATTTAGAGCTTCAGGTTGA 1173 0.4365 MSRTLAVLLGGAAGAMTLVGIVIIFLWFCQSRNWRISRTSETGSSDPSVQVGRNIGVELSLTRGRSHPPDSREARCFLMEELVQATKNFNDINLIGEGKFGEVYKGLLNDGLIVAIKKRPGAPNQEFIEEVRYLSSIHHRNLVSLLGYCQENNQQMLIYEYIPNGSVSSHLYGAGQISHEKLEFKHRLPIALGAAKGLAHLHALSPTLVHKNFKTANVLVDENFIPKVADAGLRNLLGRVDVAGPSSHLVADDIFLAPEVREFRRFSERSDVYSFGVFLLELVSGREAMQSQSSESAQSLVEWVQNYHDLSNISTIIDHRLGNSFTTEGMKEFIQLTVRCVDPSSERRPTMNYVVSELDRILEKEMSLTTIMGEGTTIVTLGSQLFRASG* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00098 390 Pfam Protein tyrosine and serine/threonine kinase 93 358 IPR001245 GO:0004672|GO:0006468
Eupl04g00098 390 SUPERFAMILY Protein kinase-like (PK-like) 66 358 IPR011009 -
Eupl04g00098 390 FunFam Protein kinase superfamily protein 162 375 - -
Eupl04g00098 390 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 14 366 IPR047117 -
Eupl04g00098 390 Gene3D Transferase(Phosphotransferase) domain 1 162 376 - -
Eupl04g00098 390 ProSiteProfiles Protein kinase domain profile. 89 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl04g00098 390 Gene3D Phosphorylase Kinase; domain 1 62 161 - -
Eupl04g00098 390 FunFam Putative LRR receptor-like serine/threonine-protein kinase 68 161 - -
Eupl04g00098 390 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00098 Eupl-Chr4 1734649 1740013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00098 4 358 Receptor kinase-like Gene Family AT5G56890 36.772 1.07e-61 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Eupl04g00098 PK_Tyr_Ser-Thr 7.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00098 - - ming:122078555 584.334