Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00088 ATGGATTTTAACAACTCAAAAACGAACCCATCTTCGTCTTCTTCAGCTCCTCAGAAGAGCAAGAAAAAGCAGCAACAACAAGAAACAACAGGACGGTTTCTGGGTGTTCGAAGAAGGCCATGGGGGAGATACGCAGCTGAAATAAGAGACCCATCAACCAAAGAGAGGCATTGGCTCGGTACTTTCGACACCGCCGAAGAGGCCGCCCTCGCGTACGATAGAGCTGCCCGCTCCATGCGTGGTTCTCGCGCCCGCACCAACTTCGTCTACTCCGATATGCCACCTGGTTCGTCTATCACTTCCATTATCTCCCCCGACGAGGCGCAACACGACCTCTCCGCCCTTTTTGTCCCTCAACAGCAAAACGACCCCACCACTCAACTCTTCTTTAGTCAGGATTCCGGTAATGTATGTCATTTTACCGGAGGATATACGACCGGAGACTCATGGAATATTCCTACGACTTACTCTCAACCTCAACAACAACCCGTTATGGTCGATGGTGGGTCCCACCAATTCTACGATGGAACAGAGCTCCCTCCCTTGCCCCCTGACATTTCGGACGTTTCGGGTTGTTGTTTCGGTTCCAACGTACCTGTTTCAGGTTATGACCTGGGTCAGGGAGTTTGGCCCGATACGACGGGTTTTATTGGGTTATCGGAGCAATCGAAAACTGGGTTCGACTCGGTGGGGATGGGGTCGTGTTATGGTTTCGATTCGGGCGAGTTCGTTCACAGCCCACTTTTTGGGCAAATGCCGCCGGTTTCCGATTCAGTTCCGAGCGTTACGGATGGTTTCGATTTGGGTTCTTCCGCTTTTTTCTTTTGA 828 0.5133 MDFNNSKTNPSSSSSAPQKSKKKQQQQETTGRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYSDMPPGSSITSIISPDEAQHDLSALFVPQQQNDPTTQLFFSQDSGNVCHFTGGYTTGDSWNIPTTYSQPQQQPVMVDGGSHQFYDGTELPPLPPDISDVSGCCFGSNVPVSGYDLGQGVWPDTTGFIGLSEQSKTGFDSVGMGSCYGFDSGEFVHSPLFGQMPPVSDSVPSVTDGFDLGSSAFFF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00088 275 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Eupl04g00088 275 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Eupl04g00088 275 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Eupl04g00088 275 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Eupl04g00088 275 MobiDBLite consensus disorder prediction 1 38 - -
Eupl04g00088 275 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Eupl04g00088 275 MobiDBLite consensus disorder prediction 1 32 - -
Eupl04g00088 275 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 118 - -
Eupl04g00088 275 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Eupl04g00088 275 Pfam AP2 domain 35 81 IPR001471 GO:0003700|GO:0006355
Eupl04g00088 275 CDD AP2 32 88 IPR001471 GO:0003700|GO:0006355
Eupl04g00088 275 FunFam Ethylene-responsive transcription factor 2 32 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00088 Eupl-Chr4 1582982 1583809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00088 19 260 AP2-EREBP Transcription Factor Family AT5G13910 47.390 1.70e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl04g00088 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00088 K09286 - nnu:104591899 360.533