Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00087 ATGGAAGACGTGAAGCCCTTGATTTCTACGAGTAATTCGCAATCTGATGAAGGCGGCACCATGGAAACTCGATTCCAGGAGCTCTGCAAGACTGGACTGCCGCTCGATGAAAATATGTTCACACAAGCTATGAAGTTGTTCAAAGAAAGCAAGCATCTTCTCTTAGCTAACATGTCGGCTATTGGAAGTGGAACGCCGGAGGAAATCGAACGGTTTTGGTTTGCATTCATTCTGTACTCTGTAAAGAGATTAAGTGAGGGGAACGGTGGGACAGCGATGCAGGAGAGTGACGAAAAAGGATTTACGTTATGTCAGATATTGAAGGCTGCAAAGCTGAATGTCATGGATTTCTTCAAAGAGATGCCACAGTTCTTTCTCAAGGTTGGTCCAATTCTTAGCAACCTGTATGGCACAGATTGGGAGAAGAGACTCGAGGCAAAGGAGTTGCAGGCCAATTTTGTGCATTTGAGATTTCTAAGCATGTTCTACAAACGTGCATACCAGGAGTTCTTCTTGGTAAGTGAGGGTAAGCAACCAGATGTTGCTAGTACCGCAGGCTATGTTTCAGAATACCATCGGTTTGGATGGTTGCTGTTCTTGGCACTCCGCGTCCATGCATTCGGCCGCTTCAAGGACCTGGTGACTTGCACAAATGGATTGGTTTCAATATTGGCTATCCTGATTATTCATGTTCCTGTCCGCTTCAGGAATTCCTCTACCTATGATTCCCCACGCATTGTTAGAAAAGGCAACAAACGTTTGGACGTTCTCGCATCTCTTTGTAACATATATGATACCTCGGAAGATGAGTTGCGGAGAACAATGGAGAAAGTCAATGATTTAATAGTGGATATTTTGAAGAAGAAACCCCATTTGGCATCTGAATGTAAAGCTGAAAACTTGGACAATGTCGACACAGATGGATTGACCTATTTTGAAGATCTGATGGAGGAGTCATCTTTGTCATCAAGTTTGATCACGCTGGAGAAGGACTATGATGATGCAATTCATAATAAGTGTGAGTTGGATGAAAGGGTGTTTGTTAATGATGAAGACAGCCTACTTGGTACAGGAAGCTTGTCTGGAGGTGCCATGACTATCTGCGGTGCCAAGCGCAAGTTTGATGCAATAGCCTCCCCAGTGAAGACAATTACGAGTCCACTCTCTCCCCCACGCTCTCCTATTGCACCGTCTCTTGTTGGTGCTAACTTGAAGATGGCACCTACACCAGTAAGCACAGCAATGACAACTGCAAAGTGGCTCAGAACTGTCATTTCTCCACTTCCTTCAAAACCCTCAGCAGAACTGGAGCGCTTTCTTTCTTCATGTGACAGGGATGTAACTAATGATGTAATACGTAGGGCCCACATAATATTGGAGGCCATATTTCCAAGAAGTTCGCTTTCACAGCGATCTGTTGCTGGAAACCTGCAAAGTGCAAACCTGATGGACAGCATATGGGCAGAACAGAGAAGAATGGAGGCTCTGAAGTTATACTATAGGGTTTTGGAAGCAATGTGTAGAGCAGAAGCCCAAATATTGCATGCTAGCAACTTGACCTCTTTATTAACCAATGAGAGGTTTCATCGTTGTATGCTTGCTTGTTCAGCAGAACTGGTTTTAGCAACACATAAGACAGTTACTATGTTGTTTCCTGCAGTCTTGGAGCGGACTGGCATTACAGCTTTTGATTTGAGCAAGGTGATAGAGAGTTTCATTAGACATGAAGAATCTCTTCCAAGAGAGTTAAGGCGACATTTAAATTCTTTGGAAGAGAGACTATTGGAGAGCATGGTATGGGAAAAGGGATCCTCAATGTACAACTCTTTGATCGTTGCAAGGCCGACCCTTTCTGCAGAAATAAACCGTCTGGGATTATTAGCAGAGCCCATGCCATCACTGGATGCAATTGCGATGCATAATAACGTTTCGTCTGGAGGCTTGCCACCTCTGCCTCCTTTTCATAAGCACGAGTCTTCACAAGGTCAGGATGGAGACATCCGCTCTCCAAAGAGAGTGTGTGTTGATTATAGGAGTGTGCTGGTAGAGCTCAGTTCCTTCACATCACCAGTGAAGGATCGTCTTCTGGCCTCTAACAGTCTGAAATCAAAGTTACCACCACCTCCTCTACAATCTGCTTTTGCCAGCCCAACGCGGCCAAATCCAGGAGGAGGGGGGGAAACATGCGCTGAGACAGGGATCAATGTTTTCTTTAGTAAGATTGTAAAGTTGGCTGCTGTTAGAATCAATGGCTTGGTTGAAAGGCTACAACTGCCTCAGCAAGTCAGAGAGACTGTTTACTGTCTTGTTCAACAAATCCTTAGTCAGCAGACAGCTCTTTTCTTTAACCGACATATTGACCAGATTATACTCTGCAGTTTCTATGGAGTTGCGAAGATTTCTCAGTTAAAACTGACATTTATTAGGGAAATCATTTACAACTATAGGAAGCAACCACAATGCAAACCTCAAGTTTTCCGCAGTGTCTTTGTTGACTGGTCATCAACAGACCACAATGGAAAAACGGGTCAGGAGCATGTTGATATTATTACATTTTATAATGTAATATATATTCCAGCTGTGAAGCCTCTACTGGTGGAGCTTGGCCCTGCTGGTGCAACTCTAAAAACAAACCGGCTTCCTGAAGTTAACAATAATCCTGGTGGTCAATCTCCCAGATCACCTCGGTTATCTACGTTTCCAAGTCTCCCCGATATGTCTCCAAAGAAAGTCTCCGCAGCACATAATGTCTATGTCTCTCCACTGCGATCGTCAAAGATGGATGCTTTGATCTCACACAGCTCTAGAAGCTATTACGCTTGTGTAGGAGAGAGCACTCATGCTTATCAAAGTCCTTCCAAAGACTTGACCGCCATTAATAACCGCTTGAATGGCAAGAAGGTCAACAGCAGGCTCAATTTTGAAGATGTTGGCTTGGTAACCGATTCTCTCGTTCTGGGCAGTCTCTACGTTCAAAATGGTAGTTGTGCCTCATCTTCAGGGGTTGCTGCTTTGAATTCCCCCATGAAATCTGAACAACCCGACTCATAA 3051 0.4425 MEDVKPLISTSNSQSDEGGTMETRFQELCKTGLPLDENMFTQAMKLFKESKHLLLANMSAIGSGTPEEIERFWFAFILYSVKRLSEGNGGTAMQESDEKGFTLCQILKAAKLNVMDFFKEMPQFFLKVGPILSNLYGTDWEKRLEAKELQANFVHLRFLSMFYKRAYQEFFLVSEGKQPDVASTAGYVSEYHRFGWLLFLALRVHAFGRFKDLVTCTNGLVSILAILIIHVPVRFRNSSTYDSPRIVRKGNKRLDVLASLCNIYDTSEDELRRTMEKVNDLIVDILKKKPHLASECKAENLDNVDTDGLTYFEDLMEESSLSSSLITLEKDYDDAIHNKCELDERVFVNDEDSLLGTGSLSGGAMTICGAKRKFDAIASPVKTITSPLSPPRSPIAPSLVGANLKMAPTPVSTAMTTAKWLRTVISPLPSKPSAELERFLSSCDRDVTNDVIRRAHIILEAIFPRSSLSQRSVAGNLQSANLMDSIWAEQRRMEALKLYYRVLEAMCRAEAQILHASNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAMHNNVSSGGLPPLPPFHKHESSQGQDGDIRSPKRVCVDYRSVLVELSSFTSPVKDRLLASNSLKSKLPPPPLQSAFASPTRPNPGGGGETCAETGINVFFSKIVKLAAVRINGLVERLQLPQQVRETVYCLVQQILSQQTALFFNRHIDQIILCSFYGVAKISQLKLTFIREIIYNYRKQPQCKPQVFRSVFVDWSSTDHNGKTGQEHVDIITFYNVIYIPAVKPLLVELGPAGATLKTNRLPEVNNNPGGQSPRSPRLSTFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSRSYYACVGESTHAYQSPSKDLTAINNRLNGKKVNSRLNFEDVGLVTDSLVLGSLYVQNGSCASSSGVAALNSPMKSEQPDS* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00087 1016 FunFam Retinoblastoma-related protein 1 685 895 - -
Eupl04g00087 1016 SMART RB_A_2 409 610 IPR002720 GO:0005634|GO:0051726
Eupl04g00087 1016 MobiDBLite consensus disorder prediction 878 899 - -
Eupl04g00087 1016 Gene3D - 696 887 - -
Eupl04g00087 1016 MobiDBLite consensus disorder prediction 647 668 - -
Eupl04g00087 1016 FunFam Retinoblastoma-related protein 1 191 349 - -
Eupl04g00087 1016 FunFam Retinoblastoma-related protein 1 412 600 - -
Eupl04g00087 1016 MobiDBLite consensus disorder prediction 877 899 - -
Eupl04g00087 1016 MobiDBLite consensus disorder prediction 1 21 - -
Eupl04g00087 1016 Pfam Retinoblastoma-associated protein A domain 409 610 IPR002720 GO:0005634|GO:0051726
Eupl04g00087 1016 Gene3D - 191 349 - -
Eupl04g00087 1016 SMART DUF3452_2 84 230 IPR024599 -
Eupl04g00087 1016 Pfam Retinoblastoma-associated protein B domain 734 862 IPR002719 GO:0005634|GO:0051726
Eupl04g00087 1016 SUPERFAMILY Cyclin-like 732 902 IPR036915 -
Eupl04g00087 1016 Pfam Domain of unknown function (DUF3452) 95 230 IPR024599 -
Eupl04g00087 1016 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1014 IPR028309 GO:0006357|GO:0051726
Eupl04g00087 1016 SUPERFAMILY Cyclin-like 417 612 IPR036915 -
Eupl04g00087 1016 Gene3D - 412 600 - -
Eupl04g00087 1016 MobiDBLite consensus disorder prediction 700 726 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00087 Eupl-Chr4 1541328 1563737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00087 1 1016 Core Cell Cycle Gene Families AT3G12280 68.257 0.0 1379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Eupl04g00087 RB_A 9.9e-66 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00087 K04681 - nnu:104591900 1625.53