Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00085 ATGGTTCCGACACGGTTCGCATGGCCGTACGGTGGTCGCCAGGTCATCCTCAGTGGTTCGTTTACAGGGTGGACCGATCAGATACCGATGACTCCAGTGGAGGGTTCGTCGATGGTTTTCCAGGCAATTTGGAATCTTGCACCAGGTTACCATCAGTATAAGTTCTTGGTCGACGGTGTATGGCGCCTTGATGAACAGCAGCCATATGTTACTGATGAGTATGGGACAGTGAATAATATCATACTTGTAAAGGAACAAGAATTTGTCCCTTCAGTTTTACATTCCGAGGCTTCTAGTTCTAAATCAAGCATGGATGTGGATAATGGCATCTTTCAGTGCCCGGCTTCATTGTCAGGTGGCATGCTTCGGGACCCGGTGTTGCAGATTTCAGATGGCGACTTAGATGTTTTTCGTTGTCGCCTTTCCATACTATTGTCAAGATATACGGCGTATGAGTTGCTTCCCGAGTCAGGCAAGGTCTTTGCCTTGGATGTTAAGGTGCCTGTGAAACAAGCATTCCATATAATGTATGAGCAGGGCCTTGCTGTTGTGCCTATTTGGGATGAATACAAGGGACAGTTTTCTGGGATGCTGACTGCTTCTGACTTTATATTAATCCTGACAGAGCTCCATAAAAATGGATCAATGCTGACCAATGAAGAGCTTGAAATGCATTCAGTATCTGCTTGGAAGGAAGGGAAATTTCAACTCAACAGAAAGTCCGATGGGCCCATACAACTGCCGTTTGTAAGGCCTTTGATCCAAGCTGGTCCACATGAGTCTCTAAAAGATGTCTCTCTGAGGATTCTGCAAAATAAGATATCCGCGGTCCCCATCATCCATTCGATGCAAGATGGATCATGTCCCCAGTTGTTACATCTTGCATGCCTTCCTGGAATATTAAAACATGTTTGCAGGCATTTTAGACACTCTCCTGGAAGTCTGCCTCTTCTACAACAACCAGTTGGTAGGCTCCCTTTAGGTACATGGGTACCAGAAATTGGAAGAGCAGGTGGATGCCAGCTAACAACATTGCAGCCTAATGCCCCTCTAAGCTCTGCTCTTACTTTATTAATAGAAGCTCAAGTAAGTTCCATACCTATTGTTGATGATAATGGGTCTCTTCTGGATGTGTACTCTCGAAGTGATATTACCTCATTGGCAAAAGGCAGTGCATACACTCGTATTCGGCTTGATCAAACAAGTATGCATCAAGCACTGCAACTGGGATACGATGCCAATGTTCCCGTTAATGCCCACAGATGCCAAACATGTCTGCGTTCCTATTCCCTGCTTGAGGTTATGGAGCGCCTCTCGGATCCAGCGGTGCGGCGGCTCATTGTCATTGAAGCTGGTAGCAAGCGCGTGGAAGGCATTATCTCATTGAGGGATATATTTAATTTTCTTCTGGGCTGA 1416 0.459 MVPTRFAWPYGGRQVILSGSFTGWTDQIPMTPVEGSSMVFQAIWNLAPGYHQYKFLVDGVWRLDEQQPYVTDEYGTVNNIILVKEQEFVPSVLHSEASSSKSSMDVDNGIFQCPASLSGGMLRDPVLQISDGDLDVFRCRLSILLSRYTAYELLPESGKVFALDVKVPVKQAFHIMYEQGLAVVPIWDEYKGQFSGMLTASDFILILTELHKNGSMLTNEELEMHSVSAWKEGKFQLNRKSDGPIQLPFVRPLIQAGPHESLKDVSLRILQNKISAVPIIHSMQDGSCPQLLHLACLPGILKHVCRHFRHSPGSLPLLQQPVGRLPLGTWVPEIGRAGGCQLTTLQPNAPLSSALTLLIEAQVSSIPIVDDNGSLLDVYSRSDITSLAKGSAYTRIRLDQTSMHQALQLGYDANVPVNAHRCQTCLRSYSLLEVMERLSDPAVRRLIVIEAGSKRVEGIISLRDIFNFLLG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00085 471 ProSiteProfiles CBS domain profile. 334 394 IPR000644 -
Eupl04g00085 471 SUPERFAMILY CBS-domain pair 340 470 IPR046342 -
Eupl04g00085 471 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 129 469 - -
Eupl04g00085 471 Gene3D - 128 312 IPR046342 -
Eupl04g00085 471 FunFam Sucrose nonfermenting 4-like protein 1 84 - -
Eupl04g00085 471 Gene3D Immunoglobulins 1 85 IPR013783 -
Eupl04g00085 471 CDD E_set_AMPKbeta_like_N 3 83 - -
Eupl04g00085 471 Pfam CBS domain 420 470 IPR000644 -
Eupl04g00085 471 Pfam CBS domain 343 387 IPR000644 -
Eupl04g00085 471 Gene3D - 323 471 IPR046342 -
Eupl04g00085 471 ProSiteProfiles CBS domain profile. 153 213 IPR000644 -
Eupl04g00085 471 Pfam Glycogen recognition site of AMP-activated protein kinase 2 88 IPR032640 -
Eupl04g00085 471 SUPERFAMILY CBS-domain pair 143 311 IPR046342 -
Eupl04g00085 471 SMART cbs_1 421 470 IPR000644 -
Eupl04g00085 471 SMART cbs_1 159 208 IPR000644 -
Eupl04g00085 471 SMART cbs_1 341 389 IPR000644 -
Eupl04g00085 471 SUPERFAMILY E set domains 1 84 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00085 Eupl-Chr4 1511312 1531159 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00085 6 85 Protein tyrosine phosphatase (PTP) family AT3G01510 35.366 7.44e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00085 - - ming:122077123 729.939