Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00084 ATGGATTTTCTTGATGTCAGTCTCAAAGAAGTAGGTGTAGCAGTATTACAGGAACTGTGGAACAAAGTGGGATTAGCGGCGAAGCAGCTTGTTAATGAAACGGAAGATGTGGTGCTTGAAAAGGAGAGTTTCAGGGAATTCTCCAAACCTATCGCAGAACTGAATACCCTTTTCCAAGCCTTGCAGGCCAGGAAGGTGGAGGAAACAACAGGTTCTAGACCCACAATAACTGCTTTAGAGACCATGCATTCTCAGCTAAGGAAAGCCTGCAAGGTCATCGAAGATTACAAATCAGGGAGCCAACTCCGTCGTTTTCTCAACTCCCACTCTGTCCTCGAGCAGATGCAGGAACTTGCCAAGGAGATTGCTGAGACCATTTCTTCATTGGACTTGGCTAATCTAGATGCAGCCTTGAACCTCGAGTCCAAAACCGACCAGATCATCAACAATCTTAGGTCCATGGAGTTTCGATCTGCAGCTGCGACCGACGCCATCACATCAGAGATTGAGAAATCAATGTCCCAGAATGGAAGAAACCGGGACCACTCCCTCCAGCTCTTGCAAAAAATTGCAGAAGCTGTTGGAGCAAGCGCGAATGCTTCGCTTGTACAGAATGAGCTAGCACTGTTGAAGCAGGAAAAGGAAGAAATGGAAGCACAAAAGAAGAAAGCTGAGGCCCTTCAGCTCTCTCAACTGATACAGTTACTGTACAGTTCAGAACTAGTACCAAGCCCGCAAGAACAGGCAATCGCGACATACAGGCAATATTCGATTGGCTCGTTTACGTGTCCATTATGTAAAGAGCTGATGACGGACCCAGTTGCCATTGTCTGTGGTCACAGCTTCGAGAGGAAAGCAATCCTGGAGCATTTTGGAAGAGGAGAGAGTACCTGCCCCACCTGCGAAATGGAGCTCGATTCTCTCGAGCTTACCCCAAACCTTTCTCTTCGGGGCTCTATAGAGGAATGGAAGCAAAGGGACGTGGATTTCAAGTTCCAAAGTGCAGTTTCGGGAATCAACTCCAATGACGACGACATACTAAAGAAATCATTAGATGACCTGCAACAACTGATGGAAGTGCCTCACTACAGAGCTGTAAGTTCAGAGAAAGGTCTCATCCCGAAGATGGTGGAAATCGTTAAAGCTAATACCCTAAACACCAAGGCAGCCCTAAAATGTCTCTATTACCTCGCTAGTTACTGTGACGACAACAAGGAAGTTATTGTCAAAGAAGGAGGCATTCGTTGCATCGTGAAGCATTTCTACAAAGGAGAGGCAGAACCAGATGCTATTGCAATTTTGTTGGTGCTGTCGGTGAACGAAACATTTGCAGAGGAAATAGGCAAGGCCAAAGACTGTATCCCTCTCTTGGTCTCTTTGCTCCATAACAATAACCCTGATGTCTGGCAGAAAGCCCAACAGGTGTTGCAAACCCTTTCTTCAAACACTCACTTTGTCCTCGAGATGGCTAAAGCTGGGCATTTTCAACCATTTGTCGCTCGGTTTAACCAAGGATCTTCGGAGACCAGAACTACAATGGCTGCAGCTCTAATAAAAATGCAACTTGGAGACAATAGCATCAAGGACTTCGAACACAAGCAATTTGTAAGCAAGCTTGTCCAGATGCTCTCATCGAGCTCACCGGCCTGCAAATCTGCTTGCCTCATGTGCATCAAGAAGTTCTTGGCTTACCCCAGGATGGTGAAACGGTTTCTGGCAGATACTACCACAATTTCGCTCTTGATTGGTTTCATATCATCTGTAAGCTCCGAACAGCACTGGAAACAGCAAACCACAGAGGTCCTCACTTCACTGGTTGAAGCTACCCAGCTCTCCGACTTCCAGATATATGCAGGGTTGCAGGAGCTGCAATCGCAGCGCAACATCGGCCTCTTTTTGCAACTTGCGGCCACTTCAGATCATCAATTGAAGGCTCAAATCTTGCAGCTGCTATATGTGCTCAGCTATAAATCGGAGACAGCTCGAAACCTGGTACGATCCGACAAGGATGCAGTGGCAAAACTCTTCTCTTCTCTCAATTGTGACCAACCTGAGGTGAGACATTGGGCAATGAAGCTCATATACTGCATTTCCAAAGACCATACTGCTGGGGTTCCTCTCCCTGAATCCCCAGCAAAGGAGTCGGCCATCAATGCCCTAGTGGCCATCCTCACCAGTTCAACAGAGATCAAGGAAAGATCAACTGCTGCTGGAATCATCAGCTACCTTCCTACTGATGACAACATCGTCGATGAGATGCTTCGCAGATCCGAAGCCCTGAAAGCCATTCAAGAGATTATTTGCACCATAGATAATGATTTCGGGGTAAGGGCACCCGTCAACCCAGGTGAGTCCCTATTGGAGAATGCTCTAGCAGCACTCCTACGCTACACACAACCCGGCAAGCCTGAACTTCAGAGGCAAGTAGGTGAGCTCGAGCTGTACCCATCACTAGTTCGTGTACTCTCTAGGGGTAGCTCACTTGCAAAGCAGCGAACTGCCACTGCACTTGCCCATCTATCCCACCAATCCAACTTGTCCATAATTGATGCCACAATCATCTCCAAGCAGCTGTGGCTACCCAGACTCTTCCCCAGGATGTCATATTGCTGCTCAACCTCAGTACCGGATCTGTGCTCTGTCCATGGCTCCGCCTGTTCATCTAGGACTACCTTCTGCCTTGTCAAGGCTGATGCAGTGAGACCACTGGTGCAGACACTAAACGACACAGATTCCGGTGCCGTGGAGGCTGCTCTGATGGCACTCGATACCCTGCTAACAGATCACATCGCACTCTCACATGCAGCTGCCGCCATAGTGGACAGTCAGGGTGTGCCTGCCATTCTAGAGGTGCTGGAAAAGGGATCCGCGTCTGCCAAAGAAAAAGCCCTTGACCTCTTCCAAAGGATCTTACAGCATACCGATATCACAAAACCACAGAGCGATCGGTCTGAGAGGATCCTCATCCAACTTCTCACGGATGATGTACTAAAAAAGAAGGTTGCTTTGGTACTCAGGCAGATGAATCTCCTGCCAGAGCAATCTTCCTACTTCTAA 3057 0.4802 MDFLDVSLKEVGVAVLQELWNKVGLAAKQLVNETEDVVLEKESFREFSKPIAELNTLFQALQARKVEETTGSRPTITALETMHSQLRKACKVIEDYKSGSQLRRFLNSHSVLEQMQELAKEIAETISSLDLANLDAALNLESKTDQIINNLRSMEFRSAAATDAITSEIEKSMSQNGRNRDHSLQLLQKIAEAVGASANASLVQNELALLKQEKEEMEAQKKKAEALQLSQLIQLLYSSELVPSPQEQAIATYRQYSIGSFTCPLCKELMTDPVAIVCGHSFERKAILEHFGRGESTCPTCEMELDSLELTPNLSLRGSIEEWKQRDVDFKFQSAVSGINSNDDDILKKSLDDLQQLMEVPHYRAVSSEKGLIPKMVEIVKANTLNTKAALKCLYYLASYCDDNKEVIVKEGGIRCIVKHFYKGEAEPDAIAILLVLSVNETFAEEIGKAKDCIPLLVSLLHNNNPDVWQKAQQVLQTLSSNTHFVLEMAKAGHFQPFVARFNQGSSETRTTMAAALIKMQLGDNSIKDFEHKQFVSKLVQMLSSSSPACKSACLMCIKKFLAYPRMVKRFLADTTTISLLIGFISSVSSEQHWKQQTTEVLTSLVEATQLSDFQIYAGLQELQSQRNIGLFLQLAATSDHQLKAQILQLLYVLSYKSETARNLVRSDKDAVAKLFSSLNCDQPEVRHWAMKLIYCISKDHTAGVPLPESPAKESAINALVAILTSSTEIKERSTAAGIISYLPTDDNIVDEMLRRSEALKAIQEIICTIDNDFGVRAPVNPGESLLENALAALLRYTQPGKPELQRQVGELELYPSLVRVLSRGSSLAKQRTATALAHLSHQSNLSIIDATIISKQLWLPRLFPRMSYCCSTSVPDLCSVHGSACSSRTTFCLVKADAVRPLVQTLNDTDSGAVEAALMALDTLLTDHIALSHAAAAIVDSQGVPAILEVLEKGSASAKEKALDLFQRILQHTDITKPQSDRSERILIQLLTDDVLKKKVALVLRQMNLLPEQSSYF* 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00084 1018 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842|GO:0016567
Eupl04g00084 1018 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Eupl04g00084 1018 SMART arm_5 932 972 IPR000225 GO:0005515
Eupl04g00084 1018 SMART arm_5 401 439 IPR000225 GO:0005515
Eupl04g00084 1018 SMART arm_5 802 842 IPR000225 GO:0005515
Eupl04g00084 1018 SMART arm_5 886 927 IPR000225 GO:0005515
Eupl04g00084 1018 SMART arm_5 440 481 IPR000225 GO:0005515
Eupl04g00084 1018 Gene3D - 875 1008 IPR011989 -
Eupl04g00084 1018 Gene3D - 325 626 IPR011989 -
Eupl04g00084 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 18 1018 - -
Eupl04g00084 1018 Coils Coil 200 230 - -
Eupl04g00084 1018 ProSiteProfiles Zinc finger RING-type profile. 263 302 IPR001841 -
Eupl04g00084 1018 SUPERFAMILY RING/U-box 260 326 - -
Eupl04g00084 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 324 IPR013083 -
Eupl04g00084 1018 SUPERFAMILY ARM repeat 333 608 IPR016024 -
Eupl04g00084 1018 Gene3D - 18 133 IPR036537 GO:0007166
Eupl04g00084 1018 SUPERFAMILY ARM repeat 629 998 IPR016024 -
Eupl04g00084 1018 Pfam U-box domain 261 325 IPR003613 GO:0004842|GO:0016567
Eupl04g00084 1018 Gene3D - 627 860 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00084 Eupl-Chr4 1490581 1494846 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00084 260 1018 U-box Gene Family AT1G76390 26.087 2.19e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00084 - - nnu:104592711 1208.36