Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00077 ATGAAACGCTCAACCGACGATATCGGCCCCACCCTCCCCACCAGCACCAAGAAGCCGGTCTTCCTCACCAAAGCCCAACGCGAACAGTTAGCCCTTCAACGCCGTGAAGAAGAAGTCGCCGAGCAAAAACGTCGAACCGAACAACTCCAACAACAAAATCAAAACCGACCTACTAAACCCTCCTCCGACCATTCCCCCGCACACGATTCCTCCCGCCACCACCGCTCTCGGGACCGAGAACGCGAACGAGAACGAGAGTCCGAGAGGCGCAACCGCGAACGCGAACGTGAAGAAGAAAACAAGTCCCGCGAACGCGCCCGGTTAGAAAAACAAGCGGATCGAGAACGAGAGAAGGAACTGGAATCCATCAAAGATCAGTACCTAGGGACCAAAAAACCTAAAAAGCGAGTCATCAAACCTAGCGAGAAGTTCCGCTTCTCGTTCGATTGGGAGAACACTGAAGATACCTCCCGCGACATGAATATACTGTATCAAAACCCTCACGAGGCTCAGCTCTTGTTCGGTAGAGGGTTTCGTGCCGGCATGGACCGTCGAGAGCAGAAGAAACTCGCCGCCAAGAATGAAAAAGAGATGAGAGAGGAGATCCGAAAAAAAGATGGCGTCGAGGAGAGGCCAGAGGAGGCCGCAATACAGCGACAGAAAGAAGAGGCTGCAGATCTTTACGATACGTTTGATATGAGGGTCGATCGGCACTGGTCAGAGAAGAAGCTTGAAGAAATGGCTGAAAGAGACTGGAGAATTTTCAGAGAGGATTTCAATATATCTTACAAGGGGTCGAGGATTCCTCGGCCGATACGGAATTGGGTGGAGAGCAGGTTGAGTCCTGAGCTATTGAAGGCAGTGGAGAAGGTCGGGTATAAGACTCCATCACCGATACAGATGGCCGCCATTCCACTTGGGTTGCAACAACGCGATGTGATTGGGATTGCAGAGACGGGTTCCGGTAAGACTGCCGCCTTTGTTCTCCCTATGTTGACGTACATTTCCAAACTTCCTCCCATGAATGAAGAGAACGAAGCGGAAGGGCCTTATGCTGTTGTGATGGCACCTACGAGGGAGCTTGCACAGCAGATTGAAGACGAGACTGTTAAGTTTGCGCATTATTTGGGTATCAAGGTGGTTTCAATAGTTGGAGGGCAATCAATTGAAGAGCAGGGGTTTAAGATCAGACAAGGGTGTGAGGTCGTGATTGCGACACCTGGGCGTCTTATTGATTGTTTGGAGAGGCGGTACGCAGTACTGAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGGATGATTGATATGGGTTTCGAGCCGCAGGTTGTGGGAGTATTGGATGCAATGCCTTCGAGCAATTTAAAACCAGAGAATGAAGATGAGGAGCTCGATGAGAAAAAGATATACCGAACCACTTACATGTTCAGTGCGACAATGCCACCAGCTGTGGAGCGACTTGCAAGGAAGTACTTAAGGAACCCAGTTGTGGTCACAATTGGTACTGCTGGAAAGGCGACTGAGCTCATCACCCAGCATGTAATCATGGTGAAGGAATCAGAGAAAATGTCAAGGCTGCAGAAGTTACTGAATGAGCTCGGTGATAAGACTGCTATGGTTTTTATCAATACCAAGAAGTCTGCTGATTCTCTTGCCAAAAATTTGGATAGGAATGGTTATCGTGTGACAACTTTGCACGGAGGGAAGTCACAGGAGCAGCGTGAGATTAGTCTCGAAGGGTTTAGGACCAAACGGTTTAATGTTCTTGTAGCGACAGATGTAGCGGGGCGTGGGATTGATATACCGGATGTTGCCCATGTTATAAACTATGATATGCCAGGAAATATTGAAATGTACACGCATCGTATTGGACGAACAGGGCGTGCAGGGAAGACAGGTGTGGCAACCACATTCTTGACTCTGCATGACACCGATGTGTTCTATGATCTCAAACAGATGCTTATTCAGAGCAACAGCCCAGTGCCTCCTGAGCTGGCAAGGCACGAGGCTTCAAAGTTTAAGCCAGGGTCAATTCCTGACAGACCCCCTAGACGCAATGACACCGTTTTTGCTCATTGA 2082 0.4918 MKRSTDDIGPTLPTSTKKPVFLTKAQREQLALQRREEEVAEQKRRTEQLQQQNQNRPTKPSSDHSPAHDSSRHHRSRDRERERERESERRNREREREEENKSRERARLEKQADREREKELESIKDQYLGTKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREEIRKKDGVEERPEEAAIQRQKEEAADLYDTFDMRVDRHWSEKKLEEMAERDWRIFREDFNISYKGSRIPRPIRNWVESRLSPELLKAVEKVGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISKLPPMNEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELITQHVIMVKESEKMSRLQKLLNELGDKTAMVFINTKKSADSLAKNLDRNGYRVTTLHGGKSQEQREISLEGFRTKRFNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00077 693 Pfam Helicase conserved C-terminal domain 522 631 IPR001650 -
Eupl04g00077 693 MobiDBLite consensus disorder prediction 29 45 - -
Eupl04g00077 693 Gene3D - 234 500 IPR027417 -
Eupl04g00077 693 MobiDBLite consensus disorder prediction 668 693 - -
Eupl04g00077 693 FunFam probable ATP-dependent RNA helicase DDX23 504 692 - -
Eupl04g00077 693 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 526 670 IPR001650 -
Eupl04g00077 693 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 219 670 - -
Eupl04g00077 693 Coils Coil 185 211 - -
Eupl04g00077 693 Coils Coil 517 537 - -
Eupl04g00077 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 349 652 IPR027417 -
Eupl04g00077 693 SMART helicmild6 550 631 IPR001650 -
Eupl04g00077 693 MobiDBLite consensus disorder prediction 8 22 - -
Eupl04g00077 693 Pfam DEAD/DEAH box helicase 298 488 IPR011545 GO:0003676|GO:0005524
Eupl04g00077 693 MobiDBLite consensus disorder prediction 1 136 - -
Eupl04g00077 693 CDD DEADc_DDX23 284 500 - -
Eupl04g00077 693 SMART ultradead3 292 514 IPR014001 -
Eupl04g00077 693 Gene3D - 501 673 IPR027417 -
Eupl04g00077 693 MobiDBLite consensus disorder prediction 661 693 - -
Eupl04g00077 693 FunFam probable ATP-dependent RNA helicase DDX23 234 503 - -
Eupl04g00077 693 CDD SF2_C_DEAD 511 640 - -
Eupl04g00077 693 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 428 436 IPR000629 -
Eupl04g00077 693 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 273 301 IPR014014 GO:0003724
Eupl04g00077 693 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 499 IPR014001 -
Eupl04g00077 693 MobiDBLite consensus disorder prediction 62 132 - -
Eupl04g00077 693 Coils Coil 77 118 - -
Eupl04g00077 693 Coils Coil 22 52 - -
Eupl04g00077 693 MobiDBLite consensus disorder prediction 46 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00077 Eupl-Chr4 1415949 1423416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00077 280 667 Eukaryotic Initiation Factors Gene Family AT1G72730 33.933 3.22e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00077 K12858 - nnu:104591903 1183.32