Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl04g00077 | ATGAAACGCTCAACCGACGATATCGGCCCCACCCTCCCCACCAGCACCAAGAAGCCGGTCTTCCTCACCAAAGCCCAACGCGAACAGTTAGCCCTTCAACGCCGTGAAGAAGAAGTCGCCGAGCAAAAACGTCGAACCGAACAACTCCAACAACAAAATCAAAACCGACCTACTAAACCCTCCTCCGACCATTCCCCCGCACACGATTCCTCCCGCCACCACCGCTCTCGGGACCGAGAACGCGAACGAGAACGAGAGTCCGAGAGGCGCAACCGCGAACGCGAACGTGAAGAAGAAAACAAGTCCCGCGAACGCGCCCGGTTAGAAAAACAAGCGGATCGAGAACGAGAGAAGGAACTGGAATCCATCAAAGATCAGTACCTAGGGACCAAAAAACCTAAAAAGCGAGTCATCAAACCTAGCGAGAAGTTCCGCTTCTCGTTCGATTGGGAGAACACTGAAGATACCTCCCGCGACATGAATATACTGTATCAAAACCCTCACGAGGCTCAGCTCTTGTTCGGTAGAGGGTTTCGTGCCGGCATGGACCGTCGAGAGCAGAAGAAACTCGCCGCCAAGAATGAAAAAGAGATGAGAGAGGAGATCCGAAAAAAAGATGGCGTCGAGGAGAGGCCAGAGGAGGCCGCAATACAGCGACAGAAAGAAGAGGCTGCAGATCTTTACGATACGTTTGATATGAGGGTCGATCGGCACTGGTCAGAGAAGAAGCTTGAAGAAATGGCTGAAAGAGACTGGAGAATTTTCAGAGAGGATTTCAATATATCTTACAAGGGGTCGAGGATTCCTCGGCCGATACGGAATTGGGTGGAGAGCAGGTTGAGTCCTGAGCTATTGAAGGCAGTGGAGAAGGTCGGGTATAAGACTCCATCACCGATACAGATGGCCGCCATTCCACTTGGGTTGCAACAACGCGATGTGATTGGGATTGCAGAGACGGGTTCCGGTAAGACTGCCGCCTTTGTTCTCCCTATGTTGACGTACATTTCCAAACTTCCTCCCATGAATGAAGAGAACGAAGCGGAAGGGCCTTATGCTGTTGTGATGGCACCTACGAGGGAGCTTGCACAGCAGATTGAAGACGAGACTGTTAAGTTTGCGCATTATTTGGGTATCAAGGTGGTTTCAATAGTTGGAGGGCAATCAATTGAAGAGCAGGGGTTTAAGATCAGACAAGGGTGTGAGGTCGTGATTGCGACACCTGGGCGTCTTATTGATTGTTTGGAGAGGCGGTACGCAGTACTGAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGGATGATTGATATGGGTTTCGAGCCGCAGGTTGTGGGAGTATTGGATGCAATGCCTTCGAGCAATTTAAAACCAGAGAATGAAGATGAGGAGCTCGATGAGAAAAAGATATACCGAACCACTTACATGTTCAGTGCGACAATGCCACCAGCTGTGGAGCGACTTGCAAGGAAGTACTTAAGGAACCCAGTTGTGGTCACAATTGGTACTGCTGGAAAGGCGACTGAGCTCATCACCCAGCATGTAATCATGGTGAAGGAATCAGAGAAAATGTCAAGGCTGCAGAAGTTACTGAATGAGCTCGGTGATAAGACTGCTATGGTTTTTATCAATACCAAGAAGTCTGCTGATTCTCTTGCCAAAAATTTGGATAGGAATGGTTATCGTGTGACAACTTTGCACGGAGGGAAGTCACAGGAGCAGCGTGAGATTAGTCTCGAAGGGTTTAGGACCAAACGGTTTAATGTTCTTGTAGCGACAGATGTAGCGGGGCGTGGGATTGATATACCGGATGTTGCCCATGTTATAAACTATGATATGCCAGGAAATATTGAAATGTACACGCATCGTATTGGACGAACAGGGCGTGCAGGGAAGACAGGTGTGGCAACCACATTCTTGACTCTGCATGACACCGATGTGTTCTATGATCTCAAACAGATGCTTATTCAGAGCAACAGCCCAGTGCCTCCTGAGCTGGCAAGGCACGAGGCTTCAAAGTTTAAGCCAGGGTCAATTCCTGACAGACCCCCTAGACGCAATGACACCGTTTTTGCTCATTGA | 2082 | 0.4918 | MKRSTDDIGPTLPTSTKKPVFLTKAQREQLALQRREEEVAEQKRRTEQLQQQNQNRPTKPSSDHSPAHDSSRHHRSRDRERERERESERRNREREREEENKSRERARLEKQADREREKELESIKDQYLGTKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREEIRKKDGVEERPEEAAIQRQKEEAADLYDTFDMRVDRHWSEKKLEEMAERDWRIFREDFNISYKGSRIPRPIRNWVESRLSPELLKAVEKVGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISKLPPMNEENEAEGPYAVVMAPTRELAQQIEDETVKFAHYLGIKVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELITQHVIMVKESEKMSRLQKLLNELGDKTAMVFINTKKSADSLAKNLDRNGYRVTTLHGGKSQEQREISLEGFRTKRFNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* | 694 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl04g00077 | 693 | Pfam | Helicase conserved C-terminal domain | 522 | 631 | IPR001650 | - | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 29 | 45 | - | - | |
Eupl04g00077 | 693 | Gene3D | - | 234 | 500 | IPR027417 | - | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 668 | 693 | - | - | |
Eupl04g00077 | 693 | FunFam | probable ATP-dependent RNA helicase DDX23 | 504 | 692 | - | - | |
Eupl04g00077 | 693 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 526 | 670 | IPR001650 | - | |
Eupl04g00077 | 693 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 219 | 670 | - | - | |
Eupl04g00077 | 693 | Coils | Coil | 185 | 211 | - | - | |
Eupl04g00077 | 693 | Coils | Coil | 517 | 537 | - | - | |
Eupl04g00077 | 693 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 349 | 652 | IPR027417 | - | |
Eupl04g00077 | 693 | SMART | helicmild6 | 550 | 631 | IPR001650 | - | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 8 | 22 | - | - | |
Eupl04g00077 | 693 | Pfam | DEAD/DEAH box helicase | 298 | 488 | IPR011545 | GO:0003676|GO:0005524 | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 1 | 136 | - | - | |
Eupl04g00077 | 693 | CDD | DEADc_DDX23 | 284 | 500 | - | - | |
Eupl04g00077 | 693 | SMART | ultradead3 | 292 | 514 | IPR014001 | - | |
Eupl04g00077 | 693 | Gene3D | - | 501 | 673 | IPR027417 | - | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 661 | 693 | - | - | |
Eupl04g00077 | 693 | FunFam | probable ATP-dependent RNA helicase DDX23 | 234 | 503 | - | - | |
Eupl04g00077 | 693 | CDD | SF2_C_DEAD | 511 | 640 | - | - | |
Eupl04g00077 | 693 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 428 | 436 | IPR000629 | - | |
Eupl04g00077 | 693 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 273 | 301 | IPR014014 | GO:0003724 | |
Eupl04g00077 | 693 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 304 | 499 | IPR014001 | - | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 62 | 132 | - | - | |
Eupl04g00077 | 693 | Coils | Coil | 77 | 118 | - | - | |
Eupl04g00077 | 693 | Coils | Coil | 22 | 52 | - | - | |
Eupl04g00077 | 693 | MobiDBLite | consensus disorder prediction | 46 | 61 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl04g00077 | Eupl-Chr4 | 1415949 | 1423416 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl04g00077 | 280 | 667 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 33.933 | 3.22e-63 | 214 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl04g00077 | K12858 | - | nnu:104591903 | 1183.32 |