Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00072 ATGAGCTTCCAAGATCTCGAAAATGGCGGAAAGCCCTCCTCTTCCGCCGGCCGAAATTTGTCTCAGAGCCCCTCGCAGGCTGTGGCCGCTGGAATCTTCCAGATCAATACCGCTGTCGCCGGATTCCGGCGACTCGTCGATTCCATCGGAACCGCCAAAGACACTCCCGAGCACCGTCAGAAGCTACGCAATACGAGGCAACGGATTGGACAATTAGTGAAGGAGACTTCTGCTAAGCTCAAAGCTTTGAGCGATTCCGATCGTAGTATAAATGTTAATCCAAATAAGAAAATAGAAGATGCTAAGCTTGCAAGGGATTTTCAGGCTACCTTACAAGATTACCAGAAAGTCCAACAGCTTGCTGCGGAGCGCGAGTCAGCTTATGCACCGTCTGCTCCTCCATCGTCTTTGCCAACAAGCTCCAGTGCAGATGAGCATCCAGGTCTAGATATGGATCAAGAGAGTCAGCCTTTCCTTAGAGAACAGAAGAGACAAGAGGTATTTCTGCTGGGGAATGAGATTGCATTCAATGAGGCGATGATAGAGGAAAGGGAGCAAGGTATCAAAGACATACAAGAAGAAATCGGTCAAGCAAATGAGATATTCAGGGACCTCGCTGTTCTAGTTCATGGGCAGGGTGTTGTGATTGATGACATTGCGTCGAACATCGAGTCTTCTGCTGCCGCAACAGTCCAAGCTAAAACCCAACTCTCCAAGGCCCACAAAAGTGTGAAGTCTAGATCATCATGGTGCTGGTGGGTGCTGATAGTTTTTGTACTGGTGGTGGTCATTGTTCTGCTTGTCCTTATCATATAG 816 0.4841 MSFQDLENGGKPSSSAGRNLSQSPSQAVAAGIFQINTAVAGFRRLVDSIGTAKDTPEHRQKLRNTRQRIGQLVKETSAKLKALSDSDRSINVNPNKKIEDAKLARDFQATLQDYQKVQQLAAERESAYAPSAPPSSLPTSSSADEHPGLDMDQESQPFLREQKRQEVFLLGNEIAFNEAMIEEREQGIKDIQEEIGQANEIFRDLAVLVHGQGVVIDDIASNIESSAAATVQAKTQLSKAHKSVKSRSSWCWWVLIVFVLVVVIVLLVLII* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00072 271 SMART tSNARE_6 173 240 IPR000727 -
Eupl04g00072 271 Gene3D - 174 271 - -
Eupl04g00072 271 SMART SynN_4 12 126 IPR006011 GO:0016020
Eupl04g00072 271 Gene3D - 13 133 - -
Eupl04g00072 271 Pfam SNARE domain 215 266 IPR000727 -
Eupl04g00072 271 Pfam Syntaxin-like protein 29 128 IPR006011 GO:0016020
Eupl04g00072 271 CDD SNARE_Qa 181 239 - -
Eupl04g00072 271 MobiDBLite consensus disorder prediction 122 152 - -
Eupl04g00072 271 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 178 240 IPR000727 -
Eupl04g00072 271 FunFam Syntaxin-22 like 171 271 - -
Eupl04g00072 271 MobiDBLite consensus disorder prediction 1 23 - -
Eupl04g00072 271 FunFam Syntaxin-22 like 19 132 - -
Eupl04g00072 271 SUPERFAMILY t-snare proteins 23 233 IPR010989 GO:0016020|GO:0016192
Eupl04g00072 271 Coils Coil 181 201 - -
Eupl04g00072 271 PANTHER SYNTAXIN 26 261 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00072 Eupl-Chr4 1351708 1357161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00072 1 258 SNARE and Associated Proteins AT5G46860 58.140 3.69e-99 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00072 - - tss:122657026 367.466