Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl04g00062 | ATGAACCGAGACAAGCGGAGACACGTAGGACTTTTGGCGCCAAATCTTCCCGCCAAAACAACTACCATCACCGAACAAAGTGAACCTAAAGACAACACATTCACACACACCACTCAGCGAGAAAACGAAGAAGAAAAGACGAGGCGATTCTCCCCAAATGGTAAGCTCAACTCCTCATTTTGTTGTTATTTTCTTTCTCTTCGATCAATCTCCGCCCTAATTTTCGATCACTGGCCCATCGATCGCCGGCAGGATGACTCTGAGAACCCGTCGACACCTGGTTCCCCCACCTCGGCCGGCTTCAGCACCGACCGACTTCCTCCGAACACCAGCCGGACCTCAGATACCTACTCCGACGATGACGAGGCCGCGGTTGATCCCGATGTTGTCCCAGACGAGCCGGACAACGGAGATGAGGAAGAAGAAGAAGGAGAAGATCTCTACAACGACAACTACATGGATGATTATCGTCGGATGGAGGAGCACGACCAGTACGAATCTGTCGGTCTTGATGATTCGATGGAGGACGAGAGGGATTTGGATCAGATCATGGAGGATCGGAGGGCTGCAGAGGTGGAGCTCGACACCAGAGATGTAGTTAAGATTAATCGGAAGCTCCCGCGGCTTCTGCACGACCAAGACACAGACGAGGATATTAACTTCAGGCGTCCAAAAAGGTCTAGAGCTGATTTCAGGCCTCCAGGAGAAGCAAGAAGCTACGATGATACTGATGCAATGCAAAGTTCACCAGGAAGGTCAGAGCGTGGACACTCGAGGGATGATGTGCCAATCACTGATCAGACAGATGATGAGCCCTACGAGGACGACGATGATGATGAAGGAGAGTTTGAGATGTACCGTGTCCAAGGTACACTGAGGGAGTGGGTTACTAGAGACGAAGTGCGTCGCTTCATTGCCAGGAAATTTAAGGAGTTCCTGCTTACATACGTGAATCCAAAGAATGAACAAGGAGATTTTGAATATGTTCGGCTGATAAATGAGATGGTCTCAGCTAATAAGTGTAGCTTGGAGATCGATTACAAGCAATTCATTTATGTCCATCCCAACATTGCCATCTGGCTCGCTGATGCACCCCAATCTGTCCTTGAGGTCATGGAAGAAGTTGCCAAGAATGTTGTATTCGATTTACACCCAAACTACAAGAATATTCATCAAAAGATCTACGTACGGATAACTGACTTACCAGTTTATGATCAGATACGCAACATAAGGCAGATCCATTTGAACACCATGATTCGTATTGGAGGAGTTGTGACACGACGATCTGGGGTCTTCCCCCAGTTGCAGCAGGTGAAATATGACTGCAACAAATGTGGGATGATTCTCGGACCATTCTTCCAGAACTCGTATTCAGAAGTCAAGGTGGGATCTTGCCCTGAATGCCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGACAATTTACAGGAACTATCAGAAACTCACCCTTCAGGAGAGCCCAGGAATTGTGCCAGCTGGCCGACTTCCAAGATATAAGGAAGTGATACTCTTGAATGATCTTATTGATTGTGCCCGCCCTGGAGAAGAAATTGAGGTCACAGGAATATACACGAACAACTTCGACCTGTCTCTAAATACAAAAAATGGGTTTCCTGTCTTCGCCACAGTGGTTGAAGCAAACTATGTTACAAAGAAGCAGGATCTCTTCTCTGCTTACAAACTTACCCAGGAAGACAAGGAAGAAATTGAAAAGTTGGCCAAGGATCCCAGGATTGGAGAACGGATTATTAAGTCCATAGCACCATCAATCTATGGGCACGAGGACATAAAAACTGCGATAGCTCTTGCAATGTTTGGAGGCCAAGAGAAGAATGTTCAAGGGAAACATCGGTTGCGAGGGGACATAAATGTACTCCTCCTAGGAGACCCAGGCACGGCCAAATCACAGTTCCTCAAGTATGTCGAAAAGACGGGGCAGAGGGCCGTTTATACAACTGGTAAAGGAGCTTCTGCTGTTGGGCTCACGGCAGCAGTGCACAAGGACCCCCTCACTCGGGAGTGGACCCTTGAAGGAGGGGCCCTCGTCCTGGCCGATAGAGGGATCTGCCTTATCGATGAGTTTGACAAGATGAACGATCAGGACAGGGTGAGTATCCATGAAGCCATGGAGCAGCAGAGCATTAGTATATCAAAAGCTGGGATTGTCACATCTCTCCAGGCACGCTGCTCTGTCATTGCTGCTGCAAATCCAGTTGGAGGAAGATACGATTCTTCAAAGACATTTTCACAAAATGTTGAATTGACAGATCCTATCGTCTCTCGCTTTGACGTCCTTTGCGTTGTTAAGGACGTGGTCGATCCGGTTATAGATGAAATGCTTGCAAATTTTGTTGTTGATAGCCACTTCAAATCGCAGGCAAAGGGTGCTAACATAGATGACATGTCTGTAAGCAATTCCCAAGGAGATCCTCCAGCTTCTACCAGGCCAGTTGATTCGGAGATACTCTCTCAAGATATGCTAAAGAAGTACATAACTTATGCCAAGTTGAATGTATTCCCAAGATTGCATGATGCCGATTTGAACAAACTTACTCACGTATATGCTGAACTGCGTAGGGAGTCGTCGCATGGACAAGGAGTTCCCATAGCAGTGAGGCACATAGAATCGATGATAAGGATGTCTGAAGCACACGCAAGAATGCACCTCAGAAAACATGTGACACAGGAAGATGTCGACATGGCAATACGCGTCCTACTTGATTCATTCATTTCAACCCAAAAGTTTGGGGTCCAGAAAGCTTTACAAAAGAGCTTCAGAAAGTACATGGCATTCAAGAAGGATTACAATGGCTTTCTTCTCTCTCTCCTTCGCGGGCTTGTGAAAGATGCCTTGCACTTTGAAGAACTTGTAAACGGGTCGACTGCAGGGATTACCCATATCGAAGTCAAGGTGGAGGAGCTGCAGAACAAGGCACAGGATTATGAAATCTATGATCTGAAGCCCTTCTTCACCAGCATCCAGTTCTCCAGAGCCAACTTCGAATTAAATGAAGAGCGTGGAGTGGTAAGGCATCGGCTTGCAAGATGA | 3072 | 0.4697 | MNRDKRRHVGLLAPNLPAKTTTITEQSEPKDNTFTHTTQRENEEEKTRRFSPNGKLNSSFCCYFLSLRSISALIFDHWPIDRRQDDSENPSTPGSPTSAGFSTDRLPPNTSRTSDTYSDDDEAAVDPDVVPDEPDNGDEEEEEGEDLYNDNYMDDYRRMEEHDQYESVGLDDSMEDERDLDQIMEDRRAAEVELDTRDVVKINRKLPRLLHDQDTDEDINFRRPKRSRADFRPPGEARSYDDTDAMQSSPGRSERGHSRDDVPITDQTDDEPYEDDDDDEGEFEMYRVQGTLREWVTRDEVRRFIARKFKEFLLTYVNPKNEQGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEEVAKNVVFDLHPNYKNIHQKIYVRITDLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGMILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNYQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGIYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDKEEIEKLAKDPRIGERIIKSIAPSIYGHEDIKTAIALAMFGGQEKNVQGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPLTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIVSRFDVLCVVKDVVDPVIDEMLANFVVDSHFKSQAKGANIDDMSVSNSQGDPPASTRPVDSEILSQDMLKKYITYAKLNVFPRLHDADLNKLTHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRKHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMAFKKDYNGFLLSLLRGLVKDALHFEELVNGSTAGITHIEVKVEELQNKAQDYEIYDLKPFFTSIQFSRANFELNEERGVVRHRLAR* | 1024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 215 | 281 | - | - | |
| Eupl04g00062 | 1023 | FunFam | DNA helicase | 434 | 484 | - | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 34 | 51 | - | - | |
| Eupl04g00062 | 1023 | SUPERFAMILY | Nucleic acid-binding proteins | 308 | 555 | IPR012340 | - | |
| Eupl04g00062 | 1023 | CDD | MCM2 | 589 | 916 | - | - | |
| Eupl04g00062 | 1023 | ProSitePatterns | MCM family signature. | 695 | 703 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Eupl04g00062 | 1023 | Pfam | MCM P-loop domain | 574 | 796 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | Gene3D | - | 434 | 484 | - | - | |
| Eupl04g00062 | 1023 | Pfam | MCM AAA-lid domain | 834 | 917 | IPR041562 | - | |
| Eupl04g00062 | 1023 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 596 | 920 | IPR027417 | - | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 687 | 701 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 766 | 774 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 715 | 728 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 739 | 751 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 627 | 642 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | Pfam | MCM N-terminal domain | 307 | 399 | IPR027925 | - | |
| Eupl04g00062 | 1023 | Coils | Coil | 972 | 992 | - | - | |
| Eupl04g00062 | 1023 | Gene3D | - | 407 | 532 | IPR012340 | - | |
| Eupl04g00062 | 1023 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 292 | 966 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | Gene3D | - | 299 | 403 | - | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 180 | 202 | - | - | |
| Eupl04g00062 | 1023 | Gene3D | - | 566 | 940 | IPR027417 | - | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 439 | 451 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 474 | 488 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 416 | 433 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 550 | 561 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Eupl04g00062 | 1023 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 535 | 546 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Eupl04g00062 | 1023 | SMART | mcm | 403 | 918 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 120 | 149 | - | - | |
| Eupl04g00062 | 1023 | Pfam | Mini-chromosome maintenance protein 2 | 120 | 278 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 267 | 281 | - | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 215 | 239 | - | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 17 | 33 | - | - | |
| Eupl04g00062 | 1023 | FunFam | DNA helicase | 299 | 403 | - | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 150 | 171 | - | - | |
| Eupl04g00062 | 1023 | FunFam | DNA helicase | 566 | 940 | - | - | |
| Eupl04g00062 | 1023 | Pfam | MCM OB domain | 406 | 533 | IPR033762 | - | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 89 | 114 | - | - | |
| Eupl04g00062 | 1023 | ProSiteProfiles | MCM family domain profile. | 586 | 792 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Eupl04g00062 | 1023 | MobiDBLite | consensus disorder prediction | 84 | 202 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl04g00062 | Eupl-Chr4 | 1206903 | 1213942 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl04g00062 | 100 | 1018 | Core DNA Replication Machinery Family | AT1G44900 | 76.522 | 0.0 | 1382 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl04g00062 | K02540 | - | nnu:104591913 | 1678.69 |