Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00048 ATGGCCGTTCAGGCGCAATATCCTTCGAATGCTTTCAGGGTTGGAAATAACGTTTTAGAGGACTTTCAGCATCGAGAAAACTTCAGCGCCAATCTGTTTGGAGGTTATACCAACTACGCCGGACAGCAGGTCTTGAATGGAACCGTTTTCAGCGAACCGGAGAGCGAATTAACCTGCAATGTATCTGGATCCAGAAAGAGGAATAGAGACGATCAAATGGCAGTAACTCAACAATATCAACAGTTACATCATCATCCGCAGCAACAGCAACAAGTCTCGCAGCAATTTCGATTCGGGAACAACCTACCGAAGGTTCAAGTATTGGACAAAACCGCAACGGCTGCTATATCTACTGGTTTACAGCTTTCTTACGAAGGAAATCGACAAAATGAATCTGGAGGGACGTCGACGAGCGGAAGATGTTTTGCAGTTTCTCCTCCCGTCCCACCGCTCGCTCAAGATCTCAACTCATATCTCCTCCACCAAAATCTCGAATTCGACTCTCTAATCCTACTCCAGAACGAAAAGCTCCGATCAGCACTGGAAGAGACGCGAAAGAGACATTGCAGATCATTACTCTCGGTCCTTGGACAGCAAGTCTTGAAAAGACTTAAAGAAAAGGAAACGGAGCTGGAGTACGCGAACCGAAGGAACGCAGAGCTTGAAGAGAGAGTAAAGCAGATGAGTGCAGAGAATCAGATCTGGTTCAACGTCGCAAAGAACAACGAAGCCATCGTTTCGAGCCTGAGATCAAATCTCGAGCAGATTCTTCTGCAAAACACTGGTCAAACCAGAGAAGGCTTCGGAGACAGCGATGGGATTGCTTTTCCAGCAGACGACGCTCAGTCCTGTTGTTACGAAGGGATTGGTGAAGAAGACAAGGCAGCCGTAGCCAAGAAAACGATTCTAGAGAATAATGAACTTAAGCAACGGAAATCGTGCAAGGTATGCAGGGAAAAGGAGGTGTCCGTTCTCCTACTACCTTGCCGGCATCTTTGCCTCTGCAAAGATTGCGAGTCAAAGCTCGATTCATGTCCAATCTGCATGTCTACGAAGAACGCAAGCCTGCAAATCTTCATATCTTGA 1086 0.4678 MAVQAQYPSNAFRVGNNVLEDFQHRENFSANLFGGYTNYAGQQVLNGTVFSEPESELTCNVSGSRKRNRDDQMAVTQQYQQLHHHPQQQQQVSQQFRFGNNLPKVQVLDKTATAAISTGLQLSYEGNRQNESGGTSTSGRCFAVSPPVPPLAQDLNSYLLHQNLEFDSLILLQNEKLRSALEETRKRHCRSLLSVLGQQVLKRLKEKETELEYANRRNAELEERVKQMSAENQIWFNVAKNNEAIVSSLRSNLEQILLQNTGQTREGFGDSDGIAFPADDAQSCCYEGIGEEDKAAVAKKTILENNELKQRKSCKVCREKEVSVLLLPCRHLCLCKDCESKLDSCPICMSTKNASLQIFIS* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00048 361 PIRSF SBP1_RNase_bind 1 361 IPR017066 -
Eupl04g00048 361 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 294 360 - -
Eupl04g00048 361 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 56 358 IPR017066 -
Eupl04g00048 361 CDD mRING-HC-C3HC5_CGRF1-like 314 348 - -
Eupl04g00048 361 Coils Coil 204 231 - -
Eupl04g00048 361 Pfam Zinc finger, C3HC4 type (RING finger) 311 350 - -
Eupl04g00048 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 361 IPR013083 -
Eupl04g00048 361 ProSiteProfiles Zinc finger RING-type profile. 314 348 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00048 Eupl-Chr4 1001859 1003249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00048 310 359 C3H Transcription Factor Family AT1G73950 44.000 5.72e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00048 K19042 - msin:131246496 403.29