Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl04g00018 ATGGAAGTACCAACGGCGATAAATGCTGAAGAGCCTCGGAAGCATCGGAAGCTCTCATCGCTTCCAGAGACCTCTGATCCCCTCACCTTCGCTCGAAGTTATCAGCTGGAAGCCCTGGAGAAAGCGATTAGGGAGAACACCATTGCCTTCTTGGAGACTGGTTCTGGCAAGACTCTCATTGCGATCATGCTGCTTCGCGTTTACGCTTATATGCTCAGAAAGCCTACACAGTTCATCGCCGTCTTCTTGGTCCCTACTGTTGTTTTGGTCACTCAACAAGCTGAAGCTGTGGAAAAACATACTGACTTGAAAGTGGGCAAATACTGGGGAGAAATGGGAGTCGATTATTGGGGTGCTGTCACTTGGAAGAAAGAGCTAGACAAATATGAGGTGTTTGTGATGACACCCCAAATTTTGCTCGACGCCTTGCGTCATAGCTTTCTCAAGCTAGACATTATAAAGCTGTTAATATTTGATGAATGCCACAATGCAAGAGGCAGAAGCCCTTATGCTTGCATTATGACGGAATTTTATCACCGACAATTACGTTCTAATTCTGCTCAGCTTCCTAGGATATTTGGAATGACTGCTTCCCCCATAAAGTCTAAAGGATCAAGCTCGTCAAATATCTATGGGAAGCAAATTCTTGAACTCGAGAGTCTTATGAACTCAAAGGTATATACTGTTGCTAATGAATCTGTGTTGGCTGAGTTTATACCGTTTTCATCGCCAAAGTTGAAGCTGTATAAACATGTGGATATACCGTATCCCTTGTTTTTGTGCCTAGCTGATCATTTGAAGAGTTTAAAGTTCGAGCATGTACAATCCCTGAAAGAATTGCAACTCAAAGATACTGCAGAGGAATCTGCAATGAAAAAGATATCAAAACTGTGTGCAACTTTCATGTTTTGTTTAACAGATCTTGGTGTTTGGTTGGCTTTGAAGGCTGCTGAGTCATTATCGCGCACTGAAGCTGATATTTTTTTCTGGGGGGGTAAAAAGGATGTGATTGGTGACCGAATTGTGAGAAATTTCAGTCGAGATGTATTTCAGGTGTTCTCCACATACATACCATCTGGTCCACAATGGTGCATTGGTGTTGATATCCGAGCAGATTTGGATGCTGGCTTTCTGACTGCAAAAGTTAATTGTCTCATTGAATCTCTTATGGAGTACAGGACGATGAAGGATTTGAGATGTATAGTATTTGTAGAAAGGGTTATTACAGCAATAGTTCTTCAGTCTTTACTAAGCCAGGTGGTGAAACTTTGTAGCTGGAACACAACTTACATGGCAGGGAATCATTCCGGATTACAATCTCAGACTAGAACAGAACAAATGAAAATTATCGATGCATTCCGCAAAGGCACAGTGAATATCATTATAGCAACACAGATTCTTGAGGAGGGTCTAGATGTTCAAAGTTGCAACTTGGTCATCAGATTTGATCCATCAGCCACCGTTTGCAGCTTTATACAGTCGCGTGGTCGTGCCAGAATGCAGGGGTCAGATTATTTATTAATTATCAGGAGTGGAGATTCTTCTACACTATCAAGGGTAAAGAACTATCTTGCAAGTGGAGATATTATGCGAGAGGAATCTTTACGTCATGCTTCCCTTCCATGTGCGCCTCTTGAAAGTGAAATGTATGATGAGGAATTTTACCGCGTTGAAGCTACTGGAGCAGTTGTGACTCTGAGTTCTAGTGTTGCTTTGATATATTTCTATTGCTCAAAGCTCCCTTCTGATGGGTATTTTAGACCAGCTCCTAGATTCATTATTGACAAGGAGTCCAAGTTTTGCACCCTGCATCTTCCGAAGAGCTGCCCAATACAAACTGTTACTGCCGAAGGCCAAAATGATATGCTCAAGAAAATTGCGTGCCTTGAAGCGTGCAAGAAGTTACATGAGATTGGTGCTCTTACTGATAATCTGTTACCACTAGTTGTGGAAGAAGCCGAGTCTCAAGATTTCGGATATACATTATATGATGGTGAGCAAGTCAATTATTTCCCTGGAGAATTGGTCAGGTGTCAGTCAGCCTGCTCTGAGGAGTTGTACCATTGCTATTCAATTAGCTTAAAACGGAATTTTGATTACGATGTTCCCTTTAGAGATATTATTCTTTTAGTGGCATGTAACCTGGATTCTGATTTTGTGAATATGGATTTTGAGCTAGAAGGTAATAGGGGTTCAGTAACAGTGAACATGGTTTACACTGGTACCATTCACCTTAGTCCAGAGCAGGTTATTATAGCTAGAAGGTTCCAGATCACTGTCCTAAGGGTACTTATTGACCATAATTTGAATAAATTGAAGGATGCTATAGATGGACTTCATGATCAGGGGACTCTTCCAAGGGTTGACTATTTACTGCTCCCATCTGTTGGTTGCAATCAGAAATCTTCATTTATTGATTGGGATTGTGTTAAGTCTGTCTTGTTCCCATCTGCCGTACTCTGCTCCAGTGAAAGTGTTTGGGATAATCGTAGGCATTGTTGTTCTCCCAAGGGTTATGTTGGTGTCATGCACACAAAAGATAGTGTGGTTTGCAGATGCATGCTTGTGAACTCTTTAGTGTTCACTCCTCATAATGGGTTTATTTATTGCATCACTGGTATATTAGATGACCTGGATGGAAACTCAATTATGAAGTTGGAGGGGGAAGATGTTCTCACATACAAGAAATATTACCAATATCGGCATGGTATCGACTTGTTGTATGATCGAGAGTCACTGCTTAGTGGGAGACACATTTTTCCAGTGCAAAATTGGCTTCAGAAGCACAACAACCATCGTAAAGAGAAAGAACTGAGTAATGCTTGCGTTGAACTGCCACCCGAACTTTGTGTGATCATTATGTCTCCCATTTCCGTTAGTACATTGTATTCTTTCTCGTTGGTTCCATCTATCATGCATCGACTTGAGTCTATGCTTCTTGCTCTCAGCTTAAAGAAAATGCAATCGGATCACTGCACGCAAAATGTTACTGTTCCAACCATCAAGGTTTTGGAAGCAATTACCACAAAGAAATGCCAGGAGAAATTTTCTTTGGAATCACTGGAGACGCTAGGAGACTCTTTCCTCAAGTACGCAGTAAGTCAACAGCTATTCAGAACTAATAAGCATCATCATGAGGGTCTTCTTAGTGCTAAGAAAGAAAGAATGGTTTCTAACAGTGCCCTTTGCAAGTTTGGATGTAACCGCAAACTTCAGGGATTTATTCGTTATGTATGCTTCGATCCTAAACAGTGGGCTGTTCCTGGTGACCATTCTGGCTGTTCTGTATTGGATGAAATTTTACTTTTCAATTCAGGAAATATCTATGTTATGGGAACAAAGCTCATGAAGAGTAAGGTAGTTGCTGATGTTGTTGAAGCACTGATTGGTGTATATCTCAGCGCGGGTGGTGAATCGGCAGCTTTACTTTTTATGGATTGGCTTGGCATGCAAGTTGTTTTGGTCAATGAGATACCAAATGAGAGACCTTTCCTAGCACAACCAGAGAGGCATGTTAATATCAGCCATTTTGAATCACTGCTGAAGTACTCATTCCGTGACCCTTGTTTGTTGGTTGAAGCATTGACCCATGGTTCTTACCTGCTTCCAGAGATTCCAAGATGCTATCAGCGATTAGAATTTCTTGGGGACTCAATTTTGGATTATCTTGTCACTGTTTACCTGTACAATGAATATCCCGGCTTGTCACCGGGACTGCTAACTGACCTTCGGTCCGCTTCTGTAAACAATGATTGCTATGCATGTGCTGCAGTCAAGGCCGGATTGCACAAACATATTCTCCATGCATCCTCAGAGCTTCACAAGCAGATCACGTTTTTTGTTGACAATTTCAGGCAATCATCTCCGGATTCAACTTTTGGCTGGGAATATGGGACAGCTTTACCGAAGGTGCTTGGAGATATTATCGAATCTTTGGCTGGGGCAATTCTCGTTGATTCTGGATATAACATGGATACTGTTTGGGAGTGCATAAAACCTCTTTTGGAACCTTTGGTTACACCAAATACAGTGAAGCTCCATCCAGTGAGAGAACTGATTGAACTATGTCAGAGAAAATCGTATGAGAAGAGAACATCTATGTCATGCATTGATGGTGTGACGTCCATTACGGTAGAAGTTGTAGCGGATGGCATCTCGTACCATCATACGTGCACTGGGGCAAATAAGACTACAGCAAAGAAACTGGCTTCCAAAATTGTATTGGAGTCCTTGAAGGCAAGCATTCCCGAGCTATAA 4257 0.4174 MEVPTAINAEEPRKHRKLSSLPETSDPLTFARSYQLEALEKAIRENTIAFLETGSGKTLIAIMLLRVYAYMLRKPTQFIAVFLVPTVVLVTQQAEAVEKHTDLKVGKYWGEMGVDYWGAVTWKKELDKYEVFVMTPQILLDALRHSFLKLDIIKLLIFDECHNARGRSPYACIMTEFYHRQLRSNSAQLPRIFGMTASPIKSKGSSSSNIYGKQILELESLMNSKVYTVANESVLAEFIPFSSPKLKLYKHVDIPYPLFLCLADHLKSLKFEHVQSLKELQLKDTAEESAMKKISKLCATFMFCLTDLGVWLALKAAESLSRTEADIFFWGGKKDVIGDRIVRNFSRDVFQVFSTYIPSGPQWCIGVDIRADLDAGFLTAKVNCLIESLMEYRTMKDLRCIVFVERVITAIVLQSLLSQVVKLCSWNTTYMAGNHSGLQSQTRTEQMKIIDAFRKGTVNIIIATQILEEGLDVQSCNLVIRFDPSATVCSFIQSRGRARMQGSDYLLIIRSGDSSTLSRVKNYLASGDIMREESLRHASLPCAPLESEMYDEEFYRVEATGAVVTLSSSVALIYFYCSKLPSDGYFRPAPRFIIDKESKFCTLHLPKSCPIQTVTAEGQNDMLKKIACLEACKKLHEIGALTDNLLPLVVEEAESQDFGYTLYDGEQVNYFPGELVRCQSACSEELYHCYSISLKRNFDYDVPFRDIILLVACNLDSDFVNMDFELEGNRGSVTVNMVYTGTIHLSPEQVIIARRFQITVLRVLIDHNLNKLKDAIDGLHDQGTLPRVDYLLLPSVGCNQKSSFIDWDCVKSVLFPSAVLCSSESVWDNRRHCCSPKGYVGVMHTKDSVVCRCMLVNSLVFTPHNGFIYCITGILDDLDGNSIMKLEGEDVLTYKKYYQYRHGIDLLYDRESLLSGRHIFPVQNWLQKHNNHRKEKELSNACVELPPELCVIIMSPISVSTLYSFSLVPSIMHRLESMLLALSLKKMQSDHCTQNVTVPTIKVLEAITTKKCQEKFSLESLETLGDSFLKYAVSQQLFRTNKHHHEGLLSAKKERMVSNSALCKFGCNRKLQGFIRYVCFDPKQWAVPGDHSGCSVLDEILLFNSGNIYVMGTKLMKSKVVADVVEALIGVYLSAGGESAALLFMDWLGMQVVLVNEIPNERPFLAQPERHVNISHFESLLKYSFRDPCLLVEALTHGSYLLPEIPRCYQRLEFLGDSILDYLVTVYLYNEYPGLSPGLLTDLRSASVNNDCYACAAVKAGLHKHILHASSELHKQITFFVDNFRQSSPDSTFGWEYGTALPKVLGDIIESLAGAILVDSGYNMDTVWECIKPLLEPLVTPNTVKLHPVRELIELCQRKSYEKRTSMSCIDGVTSITVEVVADGISYHHTCTGANKTTAKKLASKIVLESLKASIPEL* 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl04g00018 1418 MobiDBLite consensus disorder prediction 1 20 - -
Eupl04g00018 1418 SUPERFAMILY dsRNA-binding domain-like 1303 1411 - -
Eupl04g00018 1418 Pfam Dicer dimerisation domain 569 649 - -
Eupl04g00018 1418 SMART helicmild6 415 501 IPR001650 -
Eupl04g00018 1418 Gene3D Ribonuclease III domain 1170 1346 IPR036389 GO:0004525|GO:0006396
Eupl04g00018 1418 FunFam Endoribonuclease dicer-like 1 564 656 - -
Eupl04g00018 1418 Gene3D - 376 530 IPR027417 -
Eupl04g00018 1418 ProSitePatterns Ribonuclease III family signature. 1210 1218 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 SMART riboneu5 1001 1157 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 SMART riboneu5 1189 1344 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 SUPERFAMILY PAZ domain 850 952 IPR036085 GO:0005515
Eupl04g00018 1418 Gene3D Dicer dimerisation domain 564 657 IPR038248 -
Eupl04g00018 1418 ProSiteProfiles PAZ domain profile. 859 954 IPR003100 GO:0005515
Eupl04g00018 1418 FunFam Endoribonuclease dicer-like 1 1168 1342 - -
Eupl04g00018 1418 ProSiteProfiles Ribonuclease III family domain profile. 1005 1137 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 Pfam Ribonuclease III domain 1210 1321 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 Pfam Ribonuclease III domain 1019 1136 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 PANTHER DICER-RELATED 45 1413 - -
Eupl04g00018 1418 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 548 IPR001650 -
Eupl04g00018 1418 SUPERFAMILY RNase III domain-like 1003 1152 IPR036389 GO:0004525|GO:0006396
Eupl04g00018 1418 Pfam PAZ domain 851 976 IPR003100 GO:0005515
Eupl04g00018 1418 CDD RIBOc 1190 1343 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 Gene3D - 1347 1414 - -
Eupl04g00018 1418 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 38 217 IPR014001 -
Eupl04g00018 1418 Pfam Helicase conserved C-terminal domain 381 499 IPR001650 -
Eupl04g00018 1418 SMART ultradead3 27 237 IPR014001 -
Eupl04g00018 1418 FunFam Endoribonuclease dicer-like protein 27 268 - -
Eupl04g00018 1418 CDD DEXHc_dicer 31 229 - -
Eupl04g00018 1418 FunFam Endoribonuclease dicer-like 1 372 535 - -
Eupl04g00018 1418 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 569 655 IPR005034 GO:0016891
Eupl04g00018 1418 SUPERFAMILY RNase III domain-like 1172 1340 IPR036389 GO:0004525|GO:0006396
Eupl04g00018 1418 ProSiteProfiles Ribonuclease III family domain profile. 1174 1321 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 CDD RIBOc 1004 1148 IPR000999 GO:0004525|GO:0006396
Eupl04g00018 1418 Pfam DEAD/DEAH box helicase 33 198 IPR011545 GO:0003676|GO:0005524
Eupl04g00018 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 513 IPR027417 -
Eupl04g00018 1418 SMART PAZ_2_a_3 824 980 IPR003100 GO:0005515
Eupl04g00018 1418 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1347 1413 IPR014720 -
Eupl04g00018 1418 Gene3D - 31 252 IPR027417 -
Eupl04g00018 1418 Gene3D Ribonuclease III domain 999 1148 IPR036389 GO:0004525|GO:0006396
Eupl04g00018 1418 Gene3D paz domain 841 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl04g00018 Eupl-Chr4 620373 647579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl04g00018 399 521 Eukaryotic Initiation Factors Gene Family AT5G11170 26.984 1.47e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl04g00018 K11592 - msin:131246466 1924.83