Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02562 ATGTTTTGCCTTGTGTTTCCTCAGTCTCGTTTGTCTGTTGTAACAATTATCTTCTATACTTGTGTTTGGATTCCATTCTTTCAGATCAAGCAGGCTCTTCTTCGCTTAATCAGGTTCGTCTCTGGGACGACGTGCCAACCAATGCAGAGCTTCACTATCCCTATGGAATGCCTAGAAGGAGCTTGCTACGAACAGTTCGATAATGATCTTCCAGTAGTGAGATATGAGGAGTTAGATTGTACATATGGAAGAGTTGACGAATTGTGTTCAGTTTGCTTGGGCGAATTCGAAATAGACGAGGAGGTGAGCCAGCTCTCAGGGTGTGGGCATGTGTTTCACCTACGCTGCATTAAGAGTTGGCTCGATCGCAACAAGTTCACCTGCCCGCTCTGTAGGACATCGGTTTACTTAAACGTTGCCGATGTTTGCCATGGAAAATGCGGTATCATAAACACCATGTGA 462 0.4502 MFCLVFPQSRLSVVTIIFYTCVWIPFFQIKQALLRLIRFVSGTTCQPMQSFTIPMECLEGACYEQFDNDLPVVRYEELDCTYGRVDELCSVCLGEFEIDEEVSQLSGCGHVFHLRCIKSWLDRNKFTCPLCRTSVYLNVADVCHGKCGIINTM* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02562 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 136 IPR013083 -
Eupl03g02562 153 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Eupl03g02562 153 SMART ring_2 89 131 IPR001841 -
Eupl03g02562 153 PANTHER - 32 137 IPR044249 -
Eupl03g02562 153 Pfam Ring finger domain 89 132 IPR001841 -
Eupl03g02562 153 SUPERFAMILY RING/U-box 68 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02562 Eupl-Chr3 58106968 58107429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02562 64 141 C3H Transcription Factor Family AT2G04240 42.308 3.72e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02562 - - msin:131223941 144.05