Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02560 ATGGAAATCAGCAGCAGTCAAAAGGGTAGCATTGTCGGGTTCTTCAGGGAAAGAGGTTTTGACGATAAAAACATCCAGGAAATGTTCAAAAGATGCAAGCGCTTAGAAGGTGTGGAAAGAGAAAGAGCCTCCGAGAACTGGGCTTACTTGAAAAGCATTGGTATTCAAGAGAGGAAGCTTCCTTCTGTTGTATCAAAGTGCCCCAGGATCCTTACTCTAGGTCTGAATGAGAAGCTCGTGCCTATGGTTCAATGTCTCACGACCTTAGGAACAAAACCTAATGAAGTGACTTTGGCTATAATCAAATTTCCCCACATACTCTCCCACAGCGTGGAGGAGAAGCTTTGTCCACTACTTGCTTTCTTTGAGGCATTGGGGGTTCCTGAAAAGCAATTGGGCAAGTTGCTTTTGCTCAATCCGAGGCTTATCAGCTACAGCATTGAATCAAAACTTACACAAATCGTGGATTTTCTTGCTAGTCTTGGCTTGAACAAGGAAGGAATGATTGGTAAGGTTCTGGTGAAGAATCCATTTATTATGGGTTATAGCGTTGAGAAAAGGCTCCGGCCTACTTCCGAGTTTATGAAGTCGGTAGGTCTGACAGAGTTAGATCTCCAAAGGGTGGCAATGTATTTTCCCGAAGTTTTGTGTAGAGATGTTGAAAAGATTCTGAGACCCAATTTTGCTTTTCTGAAGAGATGCGGGTTTGGAGATGGACAGATAGTGGTTTTGGTGACTGGGTATCCCCCTATTTTGATCAAGAGCATCCGGAATTCTTTGGAACCAAGGATCAGGTTCTTGGTGGAGGTGATGGGGAGACAGATCGATGAAGTAGTACATTACCCGGACTTCTTCCGCCACGGTCTGAAGAAGAGATTGGAGTTGAGGCAGAAACTTTTGAAACAGAGGAACATAGACTGTAGCTTGAGTGAAATGCTTGAGTGTAATCAAAAGAAGTTCAATGTCAAGTATGGCTTGATTAAAGGACTTACGTGA 996 0.4347 MEISSSQKGSIVGFFRERGFDDKNIQEMFKRCKRLEGVERERASENWAYLKSIGIQERKLPSVVSKCPRILTLGLNEKLVPMVQCLTTLGTKPNEVTLAIIKFPHILSHSVEEKLCPLLAFFEALGVPEKQLGKLLLLNPRLISYSIESKLTQIVDFLASLGLNKEGMIGKVLVKNPFIMGYSVEKRLRPTSEFMKSVGLTELDLQRVAMYFPEVLCRDVEKILRPNFAFLKRCGFGDGQIVVLVTGYPPILIKSIRNSLEPRIRFLVEVMGRQIDEVVHYPDFFRHGLKKRLELRQKLLKQRNIDCSLSEMLECNQKKFNVKYGLIKGLT* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02560 331 Gene3D Transcription termination factor 3, mitochondrial 98 327 IPR038538 -
Eupl03g02560 331 PANTHER CGI-12 PROTEIN-RELATED 125 252 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 96 328 - -
Eupl03g02560 331 SMART mt_12 61 92 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 242 274 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 170 201 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 SMART mt_12 26 56 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 Pfam mTERF 102 320 IPR003690 GO:0003690|GO:0006355
Eupl03g02560 331 Pfam mTERF 11 121 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02560 Eupl-Chr3 58097918 58100296 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Eupl03g02560 mTERF 8.7e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02560 K15031 - ming:122074135 583.563