Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02538 ATGGAAGAAGTGGGTGCGCAAGTCGCTCATCCCATTTTCGTCCGGCAGGGGCTTCCAGGTCGATTCTGCGAAGCGCCTCCCATGGCAAAGAAGCGTGATCTGCCGTGGCAAAACCCTAACTTTCAGCAACAGCAACAGCAACAGCAACAGCAACAACAACAGCGGTTACAAAACCCTAAGGGTAATTGGAACCCAAAGGTTTGGGATTGGGACAGTTTGATGTTCGTCGCCAAACCACCGGAGGTTGAGGTTTTGCGCCTGGGGACTGCGGCGAACGTGGTTGAGTCCGAGCAGAAAAAGAAAGGGGAAGAAACGTTAAAGCCTCTGGTTATGAAGAAGAGCTCTGTGGATGAGGATGGTGGGAACCTTACGTTGCAACTTGGTGGGAGTTTGTATTCTGTTGAAGAGCCCGCGGCAAGGCCCAACAAGCGAGTCCGATCTGGATCTCCGGGTGGCAGCGGCAGCTACCCAATGTGCCAGGTTGATGACTGTAGGGGAGATTTATCGAACGCGAAGGATTATCACCGTCGACATAAAGTGTGTGAGGTTCATAGCAAGACCACCAAAGCACTTGTGGGGAAGCAGATGCAGAGGTTCTGCCAACAGTGTAGCAGGTTTCACCCCCTTTCAGAGTTTGACGAGGGGAAGAGAAGCTGCAGGCGTAGGCTCGCCGGGCACAACCGGCGAAGAAGGAAAACCCAACCGGAAGATGTTTCATCTCGGCTGTTGCTTCCCGGAAACCAGGAGAACACTGGCAGTGGGAACTTGGATATAGTCAATCTGTTGTCTGTCTTTGCTCGTCTGCAAGGGAATGACGGGGACAAAACTATCAATGGCACATCAATTCCTGATAGAGATCGGTTGATCCAGATTCTTAGTAAGATAAATTCTTTACCTGTCACCGCAAACTCCGCTGCAAGGCTGCCTGTACCGGGAGGTTTTGATCTGAATGTTTCACAAGAAGTTTCTTCAGAACATCCACATAAAATGAACGGAAACACATCTGCTCCATCAACGGTGGACTTGCTTGCCATTGTTTCAGCTGCACTGGCAGCATATTCCCCTGATGCCCTTGCAATTCTGTCTCAAAGAATAAGCCAAAGCAGTGATGATGATAAAACCAAGTTGAACTGCCTGGGCCAGGGCTCCGGTTTCAATCTACCGATGAAACCTATTCCTGGTTTCCCTTCAGCTCGAGGAGAGAGAAGTACTACTATCCACTCCCCTGTAGAAGAATTTGATCGCCAAGCGCAAGAGACTCGAACTAGTTTGCCTTTGCAGCTATTTGGTTCCTCCCTTGAGGATGACAGTCCACCAAAACTGGGATCTGCCAGAAAATACTTCTCCTCTGACAGCAGTAATCCCATGGAAGAGAGATCTCCTTCATCTTCACCTCCTGTTGTGCAAAAACTGTTCCCACTGCAGACTGCATCAGAAATTATGAAACATGAGAGTATTTCGATCAGTGGAGAGGATAATGGGACGGTTGAGGCTAGTACTGCTCATGGTGGTTGGAGATCACCTTTGGAACTCTTTAAAGAGCCGAATGGAAGAGTTGAGAATTGTTCAGTTCAAAATCTACCATACCAAGCAGGTTACACATCCTCAAGTGGGTCAGATCACTCCCCTTCTAGTTCAAATTCTGATGCTCAGGACCGGACCGGGCGTATCATTTTCAAACTCTTTGATAAGGATCCTAGTAATTTACCTGGGACACTAAGGACACAGATCCTAAACTGGCTTTCTCACAGCCCATCGGAAATGGAGAGCTACATTAGGCCTGGTTGTGTGTTTCTATCAATTTATATATCAATGCCGTCTACCGCCTGGGCGCAACTCCAAGAAGACCTTCTTCGGTTTGTCAATTTGCTTGTTCAGAAATCAGATTCAGATTTTTGGAGAAATGGAAGGTTTTTGGTTCACACAGACAGGCAACTAGTATCGCATAAAGATGGCAACATCCGACTCTGCAAATCTTGGCGAACATGGAGTGCCCCAGAGTTGATATCTGTGTCGCCTCTGGCAGTTGTGGGTGGGCAGGAAACCTCTCTTGTGTTACGAGGTCGAAATCTGACTGTACCAGGCACCAAGATTCATTGCACATATATGGGAGGATACATGTCAAAGGAAGTTATAGGATCAGAGGGTACCATATATGATGACAGAAGCTTGGAGAGTTTCAAGTTTCCTGGTGGGGCTCCTAGTGTCCTGGGTCGCTGCTTCATAGAGGTGGAGAATGGTTTCAAAGGCAATAGCTTTCCTGTTATAATTGCTGATTCTACCATCTGTCGAGAATTAAGACTTCTTGAGACCGAGTTTGTGGAAGATGCTAGAATGGGCGATATCATTTCAGAAGACCAGATTCAGGATTTTGGGCAGCCGAGGTCGAGGGAGGATGTCTTGCACTTTCTAAACGAACTTGGATGGCTCTTCCAAAGGAAGAACATTCCTTCTAGGCCTGACGGTCCCGACTTCTCCCTTACAAGGTTCAAATTTCTATTCACATTTTCCATAGGAAGGGATTGGTGCGCTCTGGTGAAAACACTCCTGGACATACTTGTGGAAAGGAACTCGGAAAAGGATGGGCTATCAAGGGAATCCTTGGAGATGCTATCAGAGATTCACCTCTTGAACAGGGCAGTGAAGAGGAAGTGCAGGAACATGGTTGACTTGCTCATTCATTATTCTCTAAGCAGCAGTACTGAGGCCACCAAGAAGTACATTTTCCCTCCAAATCAAGCGGGCCCTGGTGGTATCTCACCTATGCATTTAGCTGCTTGTACGGATGATTCCGAGAATATGGTGGATGCCTTAACAAATGATCCTCAAGAGATTGGGTTGACCTGCTGGAATTCTTTACCGGATGCAAATGGGCAGTCTCCATATGCTTATGCGTCAATGAGGAACAACCACAATTACAACAGGCTGGTGGCCCAGAAGCTTGCGGACAGGAAACATGGTCAGGTCTCTATACAAATGGGGGACCAGATCTCCTTGGATCAGTCCTGGATACTAGCAGAGCAGGCCAAGCCTAGTCTCCCAACATTACAAGGGCAGCGATCTTGTGCCAGGTGTGCAGTTGTGGCGACGAGACACTACAAGCGGATGCCAGGTGCTCAAGGGCTGCTTCACCGCCCTTACGTACATTCGATGCTTGCGATAGCTGCCGTCTGTGTCTGTGTGTGCCTGTTCCTCCGAGGCTCTCCAGACATTGGCAGTGTAGCTCCTTTCAAGTGGGAGAATTTGGGATTTGGCATACAGTAA 3264 0.4822 MEEVGAQVAHPIFVRQGLPGRFCEAPPMAKKRDLPWQNPNFQQQQQQQQQQQQQRLQNPKGNWNPKVWDWDSLMFVAKPPEVEVLRLGTAANVVESEQKKKGEETLKPLVMKKSSVDEDGGNLTLQLGGSLYSVEEPAARPNKRVRSGSPGGSGSYPMCQVDDCRGDLSNAKDYHRRHKVCEVHSKTTKALVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVSSRLLLPGNQENTGSGNLDIVNLLSVFARLQGNDGDKTINGTSIPDRDRLIQILSKINSLPVTANSAARLPVPGGFDLNVSQEVSSEHPHKMNGNTSAPSTVDLLAIVSAALAAYSPDALAILSQRISQSSDDDKTKLNCLGQGSGFNLPMKPIPGFPSARGERSTTIHSPVEEFDRQAQETRTSLPLQLFGSSLEDDSPPKLGSARKYFSSDSSNPMEERSPSSSPPVVQKLFPLQTASEIMKHESISISGEDNGTVEASTAHGGWRSPLELFKEPNGRVENCSVQNLPYQAGYTSSSGSDHSPSSSNSDAQDRTGRIIFKLFDKDPSNLPGTLRTQILNWLSHSPSEMESYIRPGCVFLSIYISMPSTAWAQLQEDLLRFVNLLVQKSDSDFWRNGRFLVHTDRQLVSHKDGNIRLCKSWRTWSAPELISVSPLAVVGGQETSLVLRGRNLTVPGTKIHCTYMGGYMSKEVIGSEGTIYDDRSLESFKFPGGAPSVLGRCFIEVENGFKGNSFPVIIADSTICRELRLLETEFVEDARMGDIISEDQIQDFGQPRSREDVLHFLNELGWLFQRKNIPSRPDGPDFSLTRFKFLFTFSIGRDWCALVKTLLDILVERNSEKDGLSRESLEMLSEIHLLNRAVKRKCRNMVDLLIHYSLSSSTEATKKYIFPPNQAGPGGISPMHLAACTDDSENMVDALTNDPQEIGLTCWNSLPDANGQSPYAYASMRNNHNYNRLVAQKLADRKHGQVSIQMGDQISLDQSWILAEQAKPSLPTLQGQRSCARCAVVATRHYKRMPGAQGLLHRPYVHSMLAIAAVCVCVCLFLRGSPDIGSVAPFKWENLGFGIQ* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02538 1087 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677|GO:0005634
Eupl03g02538 1087 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 885 IPR044817 GO:0003677
Eupl03g02538 1087 FunFam Squamosa promoter-binding-like protein 14 151 220 - -
Eupl03g02538 1087 Gene3D - 150 220 IPR036893 GO:0003677|GO:0005634
Eupl03g02538 1087 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 409 468 - -
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 25 63 - -
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 36 61 - -
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 225 249 - -
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 530 551 - -
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 136 157 - -
Eupl03g02538 1087 MobiDBLite consensus disorder prediction 446 468 - -
Eupl03g02538 1087 Pfam SBP domain 159 232 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02538 Eupl-Chr3 57758317 57765566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02538 1 1085 SBP-box Gene Family AT1G20980 51.545 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl03g02538 SBP 5.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02538 - - nnu:104597228 1586.62