Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02523 ATGGATGAGGTGAAACATAAATCTCGGAGAGACGATGGCGAGAGGAAGGAGGATTCAAAGAGAAGCGATCGCGATCGTGATCGAGATAAGGAGAGAAATGGAGAGAAGCACAAGGATAAGGAGAAGGTTAGGGATCGTGACTCGGAAAAGAAAGATCGAGAAAAGTCTCGGAGGTCGGAGAGGGAGAGGAGCGTCGATGATAAATATAGGGAGAAACACAGAGATAGAGATTCTAGGCATAAGGAGAGGGAGAAGGATAGGACACGAAGTCGAGAAGAAGAGAAAGAAAGGGCGAAAGAAAAGTTGAAAGACAGAGAGGGGGAAAGGGAAAGGGAGAGAGAAAGGGAAGAGAGGGAGAGGGAAAGGGAAAGGGAAAGAGAAAGGGCCAGAGAGAGGGAGAGGGAAAGAGAAAGGGAGGAGAGGGAGCGTGAAGATAGAGAAAAGGAGAGGGTGGTCAGGGAGAGGGAGAGGGAGAGGGAGAAACGTCGGGAATTGGATAGAGATGATGATATAGATGCTGATGATGGGAGGGACCATGATAGGAAGCGGCGAAGGAGAGAGGAAGATTATAGGGAGAGAGAACGAGAACGGGAGCGGGAGCGGAGCAGGTCAGATAGGCACAGGGATGACAACGATGATGGTAGAAGGAGAAAGAGTGAGGAGGATTTGGATAACAAAGACAAGAAAACACGAGAAGAAGATTTGGAGGAAGAGCAGCGGAAACTGGATGAAGAAATGGATAAGCGGAGGAGGAGAGTTCAGGAATGGCAGGAGTTGAAAAGGAAGAAGGAAGAATCTGAGAGAGAAAAGCTGGGGGAAGCGAATGATGAGGAACCCAAGTCTGGTAAGAACTGGACCTTAGAAGGAGAGTCCGATGATGAAGAAGCTGTCCCAAATGTGAAAGCAGATAATGATAAGGACATGGACTTGGACATGGAGGAAGATGCCAAGCCTGCTGGTGAAGATGGGGATGTCATGGTTGTAGATTCTAAGAACGGAACTACCGTACCTGTTCCGCAAAATGGAGGGGAAGGTGAAAATGAGGAGGAAATTGACCCGTTAGACGCTTTCATGAATTCTATGGTACTGCCCGAAGTCGAGAAGCTGAACAATGTAGAGACTTCTTCAATGGCTGATGATGAAAAATCTGACCCCAAGATGAAGGATCAGAAAGATGGTCAAAGTAATGGGGTTCAACCACGGAAAGGTATGAATAAATCTGTGGGAAGAATAATCCCTGGTGAGGATTCCGATTCAGATTATGGGGATCTTGAGAATGATGAAGTTCCCCTAGAAGATGAAGATGATGATGAGTTCATGAAAAGGGTGAAGAAGACTAAAGCTGAGAAACTATCACTAGTTGATCACTCAAAGATCCAGTACCCACCGTTCCGGAAAAATTTCTATATTGAAGTGAAGGAGATATCAAGGATGACATCCGAGGAGGTTGCGGCATACAGAAAACAACTCGAATTAAAGATGCATGGGAAGGATGTGCCGAAGCCTGTCAAGACATGGGTCCAGACCGGATTGACAAGTAAAATCCTGGATATGATAAAGAAGCTTGGTTTTGAAAAGCCAATGCCCATCCAAGCTCAGGCTCTGCCAATAATTATGAGTGGTCGAGACTGCATAGGTATAGCAAAAACTGGCTCTGGTAAAACCCTAGCTTTTGTTTTGCCAATGTTGAGGCATATCAAGGACCAGCCACCTGTGGTGCCCGGTGATGGGCCAATTGGGCTTATAATGGCACCTACAAGAGAGCTTGTCCAGCAAATCCATAGTGATATCAGGAAATTTGCTAAGGTGATGGGTGTTAACTGTGTGCCAGTCTACGGAGGCTCTGGGGTTGCCCAACAGATCAGTGAATTAAAGCGGGGGAGCGAGATTGTTGTCTGTACTCCAGGTAGGATGATAGATATACTTTGTACGAGTAGTGGAAAGATTTCGAATCTCCGTAGAGTTACTTATCTGGTTATGGATGAAGCTGATCGAATGTTTGACATGGGTTTTGAACCTCAGATCACTCGTATTGTTCAAAATACCCGACCAGACCGCCAAACTGTACTCTTCTCTGCCACTTTCCCTCGTCAGGTTGAGATACTAGCACGAAAAGTGTTGACCAAGCCTGTGGAAATACAGGTTGGGGGAAGGAGTGTTGTGAACAAGGACATAACCCAGTTGGTTGAGGTTAGACCAGAAAGTGATAGGTTCTTAAGGCTGTTAGAGCTACTTGGAGAATGGTATGAGAAGGGGAAGATTTTGATATTTGTCCACTCGCAGGAGAAATGTGATTCTTTGTTCAAGGACATGCTCAGACACGGTTATCCTTGCCTCTCACTTCATGGAGCTAAGGATCAGACGGATCGTGAGTCCACCATTTCCGATTTCAAGAGCAATGTCTGCAATCTGTTGATTGCAACAAGTATTGCTGCCAGGGGCTTAGATGTGAAGGAGCTCGAACTCGTGATCAACTTTGATGTCCCGAACCACTACGAAGACTATGTTCATCGTGTTGGTCGGACAGGTCGAGCTGGCCGGAAAGGCTGTGCGATTACATTTATCTCAGAGGAGGACGCAAGATATGCTCCAGATCTTGTCAAAGCATTGGAACTCTCTGAGCAAGCTGTTCCTGAAGATCTGAAGGCTCTTGCTGATGGATTTATGGCGAAAGTGAATCAAGGACTTGAGCAAGCCCATGGGACGGGTTATGGTGGAAGCGGATTTAAGTTCAATGAAGAGGAGGATGAAGTGAGGAAAGCTGCTAAGAAAGCCCAGGCAAGAGAATATGGCTTTGAGGAAGATAAATCAGATTCAGACTCTGAAGATGAAGGAATTCGGAAGGCAGGTGGTGATCTCTCACAGCAAGCTGCCCTTGCTCAGGCTGCTGCTATAGCTGCAGCCTCCAAGGTAAGTATAGCTTCAATGCCAGCCTCAGTTTCGGCAGCCCAATTGCTTCCAAATGGAGGAATACCTGTATCTCTGCCCGGTGTTCTTGGTCTATCTATGCCAGGCACAGCTGCAGTATTGCCAGGTGCTACCCTGCCCATTGTGCCCAATGACGGGGCAGCTCGAGCAGCAGCATTGGCAGCTGCCATGAACTTGCAGCATAACCTAGCGAAGATCCAAGCCGATGCCATGCCTGAACACTATGAAGCAGAGTTCGAGATCAACGATTTCCCACAGAATGCTCGTTGGAAAGTGACTCACAAGGAAACTTTAGGTCCAATCTCAGAATGGACTGGGGCTGCCATTACAACCAGGGGGCAGTTTTATCCACCAGGTAAGATCCCAGGACCAGGGGAACGCAAGCTCTACCTATTCATCGAGGGCCCTACTGAATCATCTGTGAAGAAAGCGAAAGCTGAAGTGAAACGTGTTCTGGAGGACATCACAAAACAGTCACTATCACTTCCGGGTACCGCCCAACCAGGCAAGTACTCTGTTCTGTGA 3453 0.4723 MDEVKHKSRRDDGERKEDSKRSDRDRDRDKERNGEKHKDKEKVRDRDSEKKDREKSRRSERERSVDDKYREKHRDRDSRHKEREKDRTRSREEEKERAKEKLKDREGEREREREREERERERERERERAREREREREREEREREDREKERVVREREREREKRRELDRDDDIDADDGRDHDRKRRRREEDYRERERERERERSRSDRHRDDNDDGRRRKSEEDLDNKDKKTREEDLEEEQRKLDEEMDKRRRRVQEWQELKRKKEESEREKLGEANDEEPKSGKNWTLEGESDDEEAVPNVKADNDKDMDLDMEEDAKPAGEDGDVMVVDSKNGTTVPVPQNGGEGENEEEIDPLDAFMNSMVLPEVEKLNNVETSSMADDEKSDPKMKDQKDGQSNGVQPRKGMNKSVGRIIPGEDSDSDYGDLENDEVPLEDEDDDEFMKRVKKTKAEKLSLVDHSKIQYPPFRKNFYIEVKEISRMTSEEVAAYRKQLELKMHGKDVPKPVKTWVQTGLTSKILDMIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVPGDGPIGLIMAPTRELVQQIHSDIRKFAKVMGVNCVPVYGGSGVAQQISELKRGSEIVVCTPGRMIDILCTSSGKISNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDSLFKDMLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQAVPEDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAREYGFEEDKSDSDSEDEGIRKAGGDLSQQAALAQAAAIAAASKVSIASMPASVSAAQLLPNGGIPVSLPGVLGLSMPGTAAVLPGATLPIVPNDGAARAAALAAAMNLQHNLAKIQADAMPEHYEAEFEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPPGKIPGPGERKLYLFIEGPTESSVKKAKAEVKRVLEDITKQSLSLPGTAQPGKYSVL* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02523 1150 Pfam Helicase conserved C-terminal domain 737 846 IPR001650 -
Eupl03g02523 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 885 IPR027417 -
Eupl03g02523 1150 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 724 885 IPR001650 -
Eupl03g02523 1150 Coils Coil 81 168 - -
Eupl03g02523 1150 PANTHER RNA HELICASE 448 924 - -
Eupl03g02523 1150 Pfam DEAD/DEAH box helicase 529 700 IPR011545 GO:0003676|GO:0005524
Eupl03g02523 1150 MobiDBLite consensus disorder prediction 1 324 - -
Eupl03g02523 1150 CDD SF2_C_DEAD 725 855 - -
Eupl03g02523 1150 CDD KH-I_AtRH42_like 1047 1149 - -
Eupl03g02523 1150 MobiDBLite consensus disorder prediction 418 435 - -
Eupl03g02523 1150 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 713 IPR014001 -
Eupl03g02523 1150 Gene3D - 715 888 IPR027417 -
Eupl03g02523 1150 Coils Coil 225 259 - -
Eupl03g02523 1150 MobiDBLite consensus disorder prediction 922 948 - -
Eupl03g02523 1150 SMART ultradead3 523 728 IPR014001 -
Eupl03g02523 1150 SMART helicmild6 765 846 IPR001650 -
Eupl03g02523 1150 MobiDBLite consensus disorder prediction 365 436 - -
Eupl03g02523 1150 MobiDBLite consensus disorder prediction 374 391 - -
Eupl03g02523 1150 Gene3D - 457 714 IPR027417 -
Eupl03g02523 1150 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 504 532 IPR014014 GO:0003724
Eupl03g02523 1150 CDD DEADc_DDX46 493 714 - -
Eupl03g02523 1150 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 659 667 IPR000629 -
Eupl03g02523 1150 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 431 863 IPR027417 -
Eupl03g02523 1150 MobiDBLite consensus disorder prediction 1 350 - -
Eupl03g02523 1150 FunFam probable ATP-dependent RNA helicase DDX17 466 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02523 Eupl-Chr3 57545609 57549061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02523 491 866 Eukaryotic Initiation Factors Gene Family AT3G19760 33.158 6.06e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02523 K12811 - ming:122084089 1597.02