Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02520 ATGAGCGATATTAAGGATAATGAAGAAATGGTGGGACAAGATTTGCTGGATGCTTCCGAAAACGAGCTAATTGATGCGGAAGTCGAAGAAGAAGAATCACCTCACTCAGAAGAAAACCTAAACCCTATCGACAATGATGAATCATCGCCGGAGAACTCTGTGGGTAAGAATGTTGAGTTGCCTACTGAGGCTCATTTAAGCAATGACCAAGAAGGTTCCATTGAATCTCCCCCTGAACTGACCGTTGATGCCAACCCAGATGATGATGCCGATGGACTGGATGAAATTAAAAACAGTGGTGGTCATGATAGGCATCCTGCAAATCAGCCTGAAGCTGCTTCACCCAATGAAGGAGTTTTGTGTGTAAAAGCTGAAGATGAGTATGGGGAAGAATCGAAGAATGAGGTGAAAGGTGCGGAGGTAGTGGGGGTAGTTATGTCTAAAGCAAATGGTATTAAGGAATCTTTGTTGAAACAGGAGATGGCAACGGAAGAGTACCCAGTTAATATGGAGGGTTCCAACCAGTCATTTCCTGTGGAACCACAGATGGTCGAGGGTGATGAGTCAGGAACTGAAGAGGAGCAAGCTGCGTTCATGAAGGAGCTGGAGAATTTCTTCAGGGAAAGAAGTATGGAGTTCAAGCCCCCCAAGTTCTATGGAGTGGGATTAAATTGCCTCAAGTTATGGAGAGCCGTGACTAGATTGGGTGGCTATGACCAGGTGACTACATGTAAGTTGTGGCGGCAAGTGGGAGAGTCGTTCAAGCCTCCAAAGACCTGTACTACTGTCTCTTGGTCATTCCGATGTTTCTACGAGAAGGCACTTCTTGATTATGAAAGGCATAAAATGCGTGGTGGTGAACTTCGTGTTTCTGTTGCTTCCCTTACTGACCCCATGAGCATTGAAAATCAGGTGGGTGGTAATCAAGCATCAGGATCAGGTAGGGCACGAAGAGATGCCGCTGCTCGTGCTATGCAAGGGTGGCACTCTCAGCGCCTTCTTGGTAATGGTGAGGTTGGTGACCCAATTATTAAGGATAAGAACTCCATTTCTGTGTCAAAGCGTGAAAAACAGCTTAAAAGTGTTGGTGTACTTAAACGTAAAAAGCCATCTAACCTTGAGCGTGCTGTCAAAGCTGTACGAACTATTACTAAAGCAGCTAAGCCACAAATGGATACAATGGTTGTTGATATTGGACCTTCTGCTGATTGGGTGAAGATTAATGTTCGGACAACTAAAGATTGCTTTGAGGTCTATGCTTTGGTTCCAGGGCTTCTGCGTGAGGAGGTCCGTGTTCAGTCAGATCCAGCTGGCCGCTTAGTTATATCTGGTGAGCCGGAGCAGCCTGATAATCCTTGGGGTGTCACACCTTTCAAAAAGGTTATCAGCTTACCCTCAAGAATTGATCCGCATCAGACATCTGCTGTGGTCACCTTGCATGGTCAATTATTTGTACGTGTGCCTTTCGAGCAGTCGGATTTGTAG 1485 0.4579 MSDIKDNEEMVGQDLLDASENELIDAEVEEEESPHSEENLNPIDNDESSPENSVGKNVELPTEAHLSNDQEGSIESPPELTVDANPDDDADGLDEIKNSGGHDRHPANQPEAASPNEGVLCVKAEDEYGEESKNEVKGAEVVGVVMSKANGIKESLLKQEMATEEYPVNMEGSNQSFPVEPQMVEGDESGTEEEQAAFMKELENFFRERSMEFKPPKFYGVGLNCLKLWRAVTRLGGYDQVTTCKLWRQVGESFKPPKTCTTVSWSFRCFYEKALLDYERHKMRGGELRVSVASLTDPMSIENQVGGNQASGSGRARRDAAARAMQGWHSQRLLGNGEVGDPIIKDKNSISVSKREKQLKSVGVLKRKKPSNLERAVKAVRTITKAAKPQMDTMVVDIGPSADWVKINVRTTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEQPDNPWGVTPFKKVISLPSRIDPHQTSAVVTLHGQLFVRVPFEQSDL* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02520 494 FunFam AT-rich interactive domain-containing protein 3 192 291 - -
Eupl03g02520 494 MobiDBLite consensus disorder prediction 1 116 - -
Eupl03g02520 494 CDD ARID 194 279 - -
Eupl03g02520 494 FunFam AT-rich interactive domain-containing protein 3 385 493 - -
Eupl03g02520 494 Gene3D - 378 493 IPR008978 -
Eupl03g02520 494 ProSiteProfiles ARID domain profile. 192 283 IPR001606 GO:0003677
Eupl03g02520 494 Gene3D - 171 292 IPR036431 GO:0003677
Eupl03g02520 494 SMART bright_3 193 284 IPR001606 GO:0003677
Eupl03g02520 494 Pfam Hsp20/alpha crystallin family 410 491 IPR002068 -
Eupl03g02520 494 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 45 492 IPR045147 GO:0006357
Eupl03g02520 494 CDD ACD_sHsps-like 408 488 - -
Eupl03g02520 494 MobiDBLite consensus disorder prediction 20 34 - -
Eupl03g02520 494 SUPERFAMILY ARID-like 182 287 IPR036431 GO:0003677
Eupl03g02520 494 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 398 494 IPR002068 -
Eupl03g02520 494 SMART ARID_2 189 279 - -
Eupl03g02520 494 Pfam ARID/BRIGHT DNA binding domain 195 279 IPR001606 GO:0003677
Eupl03g02520 494 SUPERFAMILY HSP20-like chaperones 401 489 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02520 Eupl-Chr3 57478690 57496000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02520 185 491 ARID Transcription Factor Family AT1G76510 63.518 1.50e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Eupl03g02520 HSP20 3.7e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02520 - - msin:131222349 629.402