Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02509 ATGGCCTATCATTCGATTCCGGGTCCTGGGTCAGGATCGGGATCCGGATCGAGTTCGAATTCTGGGTTTCAATTCGTGAATTCCTCTTTTGGAGATACTACCTACACCAAGGTCTTTGTCGGGGGATTGGCATGGGAGACGCAGAACGAGACGATGCGTCGTTACTTCGAGCAATTCGGAGAGATCCTTGAGGCAGTCGTGATCACTGATAAGAATACAGGGAGATCAAAAGGTTATGGTTTTGTGACTTTCCGTGATCCTGAAGCTGCAAGGAGAGCATGTTTTGATCCAAGTCCTGTTATCGATGGTAGGCGGGCTAATTGCAATTTGGCTTCACTTGGACGGCCTCGACCACCCCCGCCTCATGGGCGTCTGAGGGCAGTAACCCCCTACTTTGGAAGTGTGCAAGGCCCCAGGGGAGCTTACGTCGGAAGCCCCACTTATCACCAACCGGTTTCCTACAGCTACCAACAAGGATATGCATATCCTCCATATGGGTACACGGCATATGGACCCGAATACGTCTACCCTCAGGGTGTCTACAGTCCTTACGCGGGTCAACAATACCTTCAGGTATACGGGGTTCCAGGGACAGTCAACACAGCTATTTACCCATTCGGGCAATTGCGCCAGCCTCTTCCTGGAAGTCATGGCTATACAGGATTTCAGGGTTATGCAATGCCGGGTCATCACATAGTTCAATTTAGTGGGTCAAATGTTAATGGAGTAACCACAGCACCTATTCCCACAATTCAAACACCATATCCAACAGTCATAGCGGCACCAGTTCCAGCACAACCACAGTTTATGGTTCCTGCTCATTCTCCTCAGTTCACACAGGGAAGCGGTTCAGACCAACTGGCAGGTTGA 870 0.5034 MAYHSIPGPGSGSGSGSSSNSGFQFVNSSFGDTTYTKVFVGGLAWETQNETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACFDPSPVIDGRRANCNLASLGRPRPPPPHGRLRAVTPYFGSVQGPRGAYVGSPTYHQPVSYSYQQGYAYPPYGYTAYGPEYVYPQGVYSPYAGQQYLQVYGVPGTVNTAIYPFGQLRQPLPGSHGYTGFQGYAMPGHHIVQFSGSNVNGVTTAPIPTIQTPYPTVIAAPVPAQPQFMVPAHSPQFTQGSGSDQLAG* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02509 289 SUPERFAMILY RNA-binding domain, RBD 28 134 IPR035979 GO:0003676
Eupl03g02509 289 PANTHER BOULE-RELATED 17 256 - -
Eupl03g02509 289 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 30 117 - -
Eupl03g02509 289 Gene3D - 16 124 IPR012677 -
Eupl03g02509 289 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 93 IPR000504 GO:0003723
Eupl03g02509 289 CDD RRM_RBM24_RBM38_like 36 111 - -
Eupl03g02509 289 SMART rrm1_1 37 109 IPR000504 GO:0003723
Eupl03g02509 289 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 113 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02509 Eupl-Chr3 57160026 57173882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02509 25 112 C2H2 Transcription Factor Family AT2G19380 42.045 1.83e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02509 - - ming:122084387 456.832