Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02502 ATGATGTCCGGATCTGAGCCGGGAATCATGTCGGGTAGAGAATCGTTCGGCATCGGTCTTCAGAAGAATCCCGTCCCCTCTCAACCGTCGGGGACACCGAACATGAGATTAGCTTTCAGTTCCGATGGAACAGCAATCTACAAACCAGTCATCGCAAACTCTCCAACATACCACGGCGGCGGTGGAGCTGGTGGTGGTGATGGCCCCGCCGGTAACATTGTCCAGCATGGCCTTAACATGAACATGGGCGAGCCGATGAAGCGGAAGCGAGGGAGGCCTAGGAAGTACGGGCCCGACGGTACTATGGCTCTTGCATTGACACCGGCAGCGCCTGCTGTCTCCCCTAGCGGGTTCTCTCCTTCTTCCGCGGCATCGCCATCGTCAATGAAGAAGGCTAGGGGCCGGCCACCAGGCTCCGGCAAGAAGCAGCAAATTGCTGCTCTGGGATCGGCAGGGATTGGATTTACACCGCATGTTATTGCAGTTAAAGCCGGAGAGGATGTATCTTCAAAAATAATGTCATTTTCTCAGCATGGTCCACGGGCTGTTTGCATTCTTTCCGCAAATGGTGCTATATCTAATGTAACACTTCGTCAAGCGGCAACATCTGGTGGGACTGTAACTTATGAGGGACGATTTGAAATCTTGTCACTTTCTGGTTCATTTCTGCTCTCAGAGAGTGGTGGTCAACGCAGCAGAACTGGTGGATTGAGTGTCTCCCTAGCTGGCCCAGATGGTCGAGTTTTAGGTGGTGGTGTGGCTGGGCTTCTAACAGCGGCATCCCCAGTTCAGGTGGTCGTGGGTAGTTTTATTGCAGATGGGCGTAAAGAGTCAAAGTCGATGAACCAATCAGAACCTTCTTCTGCACCATCGAAGCTTGCGCCAGGCGGTGGGGCAGCAGGAACCGGCAGTCCACCATCAAGGGGGACCCTGAGTGAATCCTCTGGTGGTCCTGGCAGCCCGCTCAACCAGAGCACGGGAGCCTGCAATAACAACAACCCGCAAGGAATGGCAAACATGCCATGGAAATAG 1032 0.5397 MMSGSEPGIMSGRESFGIGLQKNPVPSQPSGTPNMRLAFSSDGTAIYKPVIANSPTYHGGGGAGGGDGPAGNIVQHGLNMNMGEPMKRKRGRPRKYGPDGTMALALTPAAPAVSPSGFSPSSAASPSSMKKARGRPPGSGKKQQIAALGSAGIGFTPHVIAVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSMNQSEPSSAPSKLAPGGGAAGTGSPPSRGTLSESSGGPGSPLNQSTGACNNNNPQGMANMPWK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02502 343 MobiDBLite consensus disorder prediction 114 128 - -
Eupl03g02502 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 49 331 IPR039605 GO:0003680
Eupl03g02502 343 ProSiteProfiles PPC domain profile profile. 151 291 IPR005175 -
Eupl03g02502 343 FunFam AT-hook motif nuclear-localized protein 1-like 157 288 - -
Eupl03g02502 343 SMART AT_hook_2 130 142 IPR017956 GO:0003677
Eupl03g02502 343 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Eupl03g02502 343 MobiDBLite consensus disorder prediction 276 343 - -
Eupl03g02502 343 MobiDBLite consensus disorder prediction 305 343 - -
Eupl03g02502 343 MobiDBLite consensus disorder prediction 82 145 - -
Eupl03g02502 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Eupl03g02502 343 CDD DUF296 156 270 IPR005175 -
Eupl03g02502 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 155 272 - -
Eupl03g02502 343 Gene3D - 157 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02502 Eupl-Chr3 57030049 57038065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02502 2 343 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 55.041 1.27e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02502 - - nnu:104606854 505.368