Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02500 ATGGGTATTTTCCAAACCACACTCTGCTACTTGATTTTATCAAATGTAGGCATGATAACGGCCATAAATGATGAGTGGAAATCTGCCACTGCTACATACACCAAAGAAACAGATGGGTCTATCATTACTGAAGGTGCTTGTGGTTATGGGGACCTTCACAAGACAAGCTATGGCAAGTATAGTGCTGGAGTGAGTAGTTTGTTATTCAACAGAGGACGTACCTGCGGGGGTTGTTTTGAGGTGAGATGCGTGGATCACATCCTCTGGTGCCTGCAAGGGAGCCCTTCCATTATCATTACGGCTACAGATTTCTGTCCCCCGAATTATGGACTTTCTGCCGATTATGGAGGCTGGTGCAATTTCCCTCGAGAACACTTCGAGATGTCTGAAGCTGCTTTTGCCGAAATCGCAGAGAGAAGAGCTGATATTGTGCCAGTTCAGTATAAGAGGGTGAACTGCGTGAGAAATGGAGGGCTGAGATTTAGAGTGAGTGGGGGTTCTTACTTCTATCAAGTTCTGATCACCAATGTCGGGCTGGATGGTGAAGTGGCTGCGGTGAAAGTGAAGGGATCAAAGACAGGTTGGATACCCATGGGAAGAAACTGGGGGCAAAACTGGCAATGCAATGTAAACCTTGGAGGGCAGCCTCTATCTTTTGAAGTGATGAGCAGTAGCGGAAAAACAGTCACATCCTACAATGTCGCCCCAGCAAATTGGCGGTTTGGTCAGACATTCGAAGGGAGACAGTTCAAGTAA 756 0.4683 MGIFQTTLCYLILSNVGMITAINDEWKSATATYTKETDGSIITEGACGYGDLHKTSYGKYSAGVSSLLFNRGRTCGGCFEVRCVDHILWCLQGSPSIIITATDFCPPNYGLSADYGGWCNFPREHFEMSEAAFAEIAERRADIVPVQYKRVNCVRNGGLRFRVSGGSYFYQVLITNVGLDGEVAAVKVKGSKTGWIPMGRNWGQNWQCNVNLGGQPLSFEVMSSSGKTVTSYNVAPANWRFGQTFEGRQFK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02500 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Eupl03g02500 251 FunFam Expansin 158 250 - -
Eupl03g02500 251 Gene3D - 13 153 IPR036908 -
Eupl03g02500 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 158 IPR007112 -
Eupl03g02500 251 SUPERFAMILY PHL pollen allergen 155 247 IPR036749 -
Eupl03g02500 251 Pfam Expansin C-terminal domain 160 236 IPR007117 -
Eupl03g02500 251 SMART dpbb_1 61 148 IPR007112 -
Eupl03g02500 251 SUPERFAMILY Barwin-like endoglucanases 25 176 IPR036908 -
Eupl03g02500 251 CDD DPBB_EXPA_N 25 153 - -
Eupl03g02500 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Eupl03g02500 251 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Eupl03g02500 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Eupl03g02500 251 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Eupl03g02500 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Eupl03g02500 251 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Eupl03g02500 251 PANTHER EXPANSIN-A15 16 250 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Eupl03g02500 251 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Eupl03g02500 251 Gene3D - 155 250 IPR036749 -
Eupl03g02500 251 Pfam Lytic transglycolase 63 148 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02500 Eupl-Chr3 57020270 57022221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02500 2 251 Expansin Gene Family AT4G38210 62.451 6.81e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02500 - - ming:122085132 459.529