Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02484 ATGGAAGAAGTTCTATGTGAAGTACATGGAGAAGACACAAACGAGCAAGGGTTGCCTCCAGGGTTTAGATTTCACCCTACTGATGAAGAACTTATTACCTTTTATTTGGCTTCAAAGGTCTTCAGTGGCAGCTTTTCTGGTGTCGATATTGCTGAAGTTGATCTTAATAGATGTGAGCCCTGGGAGCTTCCAGATATGGCTAAGATGGGGGAGAGGGAGTGGTATTTCTTCAGCTTGAGAGACCGAAAGTACCCAACTGGATTGAGAACGAACCGAGCAACTGAAGCTGGGTATTGGAAAGCCACAGGCAAAGACAAGGAGGTTTACAGTGCTTCCAATGGAGCCCTACTGGGTATGAAGAAAACCCTAGTTTTCTATAGGGGCAGAGCTCCCCGAGGTGAGAAGACAAAGTGGGTCATGCACGAGTACCGCCTCGACGGTAACTTCTCCTGTCGTCACACGTGTAAGGAGGAATGGGTGATTTGCAGAATATTTCACAAGGCAGCAGGAGGAGAGAAGAAAACCCCATTTCTCCAAGCTCGTGGCTACCTTCTAGAGGCTTCTTCCTCCCCATCGACTTCCTTATCTCCACTACTAGAATCTCAATTTCCAGTACAAAACCTCCAAAACCCATATCTTTTTCACCAAGAAAATGACACAAGGAACCTAATAAACCCAGCTGGTGTATCTCAGAGTCAGACCCACCATCACCTTTTCTCCATGAGCTTCCAACCTTCGTTTTCAGGCACAAGCAACAGCACAAACGCCAACCAATCACCATCCATCCTCTTCAAAACCCTCCTCTCACATCAAGAGTTCAGTTTGAAGGAAACTAGTGTTCCGAAACAGTGGAAGACAGATAACGACTTTTCCCATTTTCAACCACTTGATGCTAACATACACTGGATGGATAAACTTTACCAAAACCCATGTCATCAAGACCCCTTGTTTTTTGAGATGGCGGGTTGTGGGGTTTTGGGGTTCTCAGCATCTGCAGACACTGTCCATGACATGTCCACTTCACTTGCTTTTAACAGGGCCGGCTTTCAGACGATGCTAGATCCTCAGATCAAAGGGCCAGCAGAATATGGACCTTTGGATGCTTAA 1107 0.4616 MEEVLCEVHGEDTNEQGLPPGFRFHPTDEELITFYLASKVFSGSFSGVDIAEVDLNRCEPWELPDMAKMGEREWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDKEVYSASNGALLGMKKTLVFYRGRAPRGEKTKWVMHEYRLDGNFSCRHTCKEEWVICRIFHKAAGGEKKTPFLQARGYLLEASSSPSTSLSPLLESQFPVQNLQNPYLFHQENDTRNLINPAGVSQSQTHHHLFSMSFQPSFSGTSNSTNANQSPSILFKTLLSHQEFSLKETSVPKQWKTDNDFSHFQPLDANIHWMDKLYQNPCHQDPLFFEMAGCGVLGFSASADTVHDMSTSLAFNRAGFQTMLDPQIKGPAEYGPLDA* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02484 368 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Eupl03g02484 368 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Eupl03g02484 368 FunFam NAC domain-containing protein 100-like 27 171 - -
Eupl03g02484 368 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Eupl03g02484 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 251 - -
Eupl03g02484 368 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02484 Eupl-Chr3 56803718 56805775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02484 1 231 NAC Transcription Factor Family AT1G76420 60.700 5.71e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl03g02484 NAM 2.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02484 - - nnu:104606836 540.806