Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02481 ATGAAATGTTCAGATCCTCCGCCGTCTTTTTCTTGCTTTCCTTCTGGGTCTTCTTCCTCGTCTCACCAACTCACTGAGTGGACTCCATATGAGAACAAGATATTCGAGAACGCACTCGCCGAGTTCGACCTTGACACACCGGACCGATTTGAAAAGATTGCGTTGATGGTGCCCGGAAAGACCGTTGAACAAATCAAGCAACAGTACGAGTTGCTAGTTGAAGACATCGAGAATATTGACTCGGGCCTTTTCCCGATACCCGATTATGTGACGAGCGAGGAGTTCGATGAGGACTCGGAGTGTCGGACTTCAAAGCGGTCCTCTGGAATGAAGTCGGGGGATCTTGAACGCAAAAAGGGGGTTCCTTGGAGTGAAGAAGAACACAGATTGTTTCTTATGGGTTTGAACAAGTATGGTAAGGGTGATTGGAGGAGCATCTCCAGGAACTATGTGCTGACTAGGACCCCGACCCAAGTCGCGAGCCATGCACAGAAGTATTTCATCCGCCTCAGCAACTCAGGGTCTACTAGGGATAGACGTCGAACCAGCATACATGACATTCGAAGCGTGAATCCACCTACCAAACCTATGATGTCTGGAAACACCAAATTCAAACCCATTGCGCCCTCTCCCTTCCCCTCCGCACCGCCCATTCTTCCACCGCGCATGAATTACTTCCCCTTCTTAGGATCCAGCAGGGTCCGGAACAGGTACAGCTCATCATCGATCTCCATGCCTGGAAGCCTTACATCAATTCCCCATAATTTCACCCCACCTGCATCTTACGTCCACAATGGGGCATACGCGAACTACTTGTCAGATGGATCAAGCAGCAGCTACCCATCAAACAACTTGATGAGCAGCCAACATTTTGATACATACAACCCCGCATACCCTCTCCACTCCGCAAACAATCCGCCCCAAATTTGA 930 0.4968 MKCSDPPPSFSCFPSGSSSSSHQLTEWTPYENKIFENALAEFDLDTPDRFEKIALMVPGKTVEQIKQQYELLVEDIENIDSGLFPIPDYVTSEEFDEDSECRTSKRSSGMKSGDLERKKGVPWSEEEHRLFLMGLNKYGKGDWRSISRNYVLTRTPTQVASHAQKYFIRLSNSGSTRDRRRTSIHDIRSVNPPTKPMMSGNTKFKPIAPSPFPSAPPILPPRMNYFPFLGSSRVRNRYSSSSISMPGSLTSIPHNFTPPASYVHNGAYANYLSDGSSSSYPSNNLMSSQHFDTYNPAYPLHSANNPPQI* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02481 309 ProSiteProfiles SANT domain profile. 22 77 IPR017884 -
Eupl03g02481 309 SUPERFAMILY Homeodomain-like 26 81 IPR009057 -
Eupl03g02481 309 MobiDBLite consensus disorder prediction 96 119 - -
Eupl03g02481 309 MobiDBLite consensus disorder prediction 1 22 - -
Eupl03g02481 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 118 169 IPR006447 GO:0003677
Eupl03g02481 309 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 288 IPR043363 -
Eupl03g02481 309 FunFam Transcription factor SRM1 19 86 - -
Eupl03g02481 309 MobiDBLite consensus disorder prediction 95 119 - -
Eupl03g02481 309 CDD SANT 122 167 IPR001005 -
Eupl03g02481 309 MobiDBLite consensus disorder prediction 174 201 - -
Eupl03g02481 309 FunFam transcription factor MYB1R1 121 172 - -
Eupl03g02481 309 CDD SANT 26 73 IPR001005 -
Eupl03g02481 309 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Eupl03g02481 309 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Eupl03g02481 309 Gene3D - 18 86 - -
Eupl03g02481 309 SMART sant 23 75 IPR001005 -
Eupl03g02481 309 SMART sant 119 169 IPR001005 -
Eupl03g02481 309 Gene3D - 121 172 - -
Eupl03g02481 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 171 IPR017930 -
Eupl03g02481 309 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Eupl03g02481 309 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02481 Eupl-Chr3 56764912 56767014 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl03g02481 Myb_DNA-binding 7.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02481 - - atr:18445445 223.787