Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02476 ATGGAGACTTCTCTCAGATATAGCGCCGATTCTAAATCTCTGAAACTCCATGCTAAGGAGAAGTTCCCCATCGACACCAAAACCTACTTGCAGGCTCATGGAGAGCTTGATACAGGCATTGGAGCTCTGAGTCATTCTAGTGCAATAATTAGACACTTTTACCCTGAGTTATCAGCCTGCCTTGGAGTAGGGTTGCTGTATAATAAACATGAGAAGCTCAGATATACTGTACGTGGAAAGAAGGCATTTCCTATTACAACCGACGGCTTATTAAGCTTTAATATCAAGGGAAGATGTGATGCTGACAAAGAATTTAGAGAGAGAAAGGCAAGAGGAGCTGCTGAATTGACTTGGAGTATATTCAATTTTTGTAAGGACCAAGACGTAAGGTTCAAAGTTGGCTATGAAATATTTGAGAAGGTGCCGTACGTGCAGATCAGGGAAAACAATTGGACTCTCAGTTCCAACATTAATGGTAAATGGAATGTTTCTCGCTGGCGTCAAATCTCGACGGCAGAATCGCCGGAATCCGTCAACGTTGACTCCGACTTCGTCGTCATCCTCGCCGCTCTCCTATGTGCTCTAATTTGCGTCGTCGGTCTTGTCGCCGTGGTTCGCTGCGCTTGGCTCCGTCGGGCCACCGTCCGCTCTGCCCGTTCTCAGCCTCAGGTTCCGGCGAACAAAGGCCTGAAAAAGAAGATTATCCGATCACTCCCGAAAGACACATTTAACAGCACCGTTAACGGAAATCTAGCTGACTGCGCTATCTGCTTGACGGAATTCGTCGACGGAGATGAGATCCGCGTCTTGCCCCAGTGTGGGCACTGGTTCCACGTCGGATGTATCGATACGTGGCTTGGGTCTCACTCGTCGTGCCCATCGTGTCGTCAGATTCTGGTCGTCGCCCGGTGTCAGAAGTGCGGCGGTCTCCCAGCGAGCCCCGACACAGGAGTTAACAAGGAGGTTGGATTGAAGGCTAGAGAAGATGATGTTAATAGGTTTTTACCTTAA 1011 0.4857 METSLRYSADSKSLKLHAKEKFPIDTKTYLQAHGELDTGIGALSHSSAIIRHFYPELSACLGVGLLYNKHEKLRYTVRGKKAFPITTDGLLSFNIKGRCDADKEFRERKARGAAELTWSIFNFCKDQDVRFKVGYEIFEKVPYVQIRENNWTLSSNINGKWNVSRWRQISTAESPESVNVDSDFVVILAALLCALICVVGLVAVVRCAWLRRATVRSARSQPQVPANKGLKKKIIRSLPKDTFNSTVNGNLADCAICLTEFVDGDEIRVLPQCGHWFHVGCIDTWLGSHSSCPSCRQILVVARCQKCGGLPASPDTGVNKEVGLKAREDDVNRFLP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02476 336 PANTHER OUTER ENVELOPE PORE PROTEIN 21B, CHLOROPLASTIC 1 164 IPR034575 GO:0008308|GO:0044070
Eupl03g02476 336 SMART ring_2 254 295 IPR001841 -
Eupl03g02476 336 Pfam Ring finger domain 253 296 IPR001841 -
Eupl03g02476 336 CDD RING-H2_EL5-like 253 296 - -
Eupl03g02476 336 ProSiteProfiles Zinc finger RING-type profile. 254 296 IPR001841 -
Eupl03g02476 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 300 IPR013083 -
Eupl03g02476 336 SUPERFAMILY RING/U-box 234 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02476 Eupl-Chr3 56668814 56679806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02476 180 336 C3H Transcription Factor Family AT1G20823 63.953 1.32e-60 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02476 - - vvi:100244433 270.781