Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02460 ATGAAAGTGGTTTGGCCTCTTCTTTTACTGGTTTTCTATTTTGGAGTTCTCTCGAATGGGGCTAGTAGGAATGTTTCTTCAAGACCTGATGTTGTGAACATAGGAGCTGTTTTCACTATCAACTCTACCATCGGGAGAGTCGCGAAGATCGCCATAGAGGCTGCAGTGGAAGATGTGAACTCCAATTCCGGTGTTCTTGGAGCAACCAAACTAAATGTCCATATGAAAGACTCCAATTGTAGTGGGTTTACTGGCATTGTTGAAGCTTTGAAATTCATGGAGACTGATATTGTTGCCATTATTGGCCCGCAATCATCTGTAATTGCCCATGTAATATCGCAAGTTGCAAATGAACTCCAAGTTCCTCTACTGTCATTTGCAGCCACAGACCCCACCCTCTCTTCACATCAGTTCCCATTTTTCGTTAGGACGACACAGAGCGATTTGTACCAGATGACTGCAGTAGCTGAGGTGGTTGATTACTATGGTTGGAGAGAGGTAATTGCAATTTTCATTGATGATGATTATGGGCGGAACGGGATAGCTACATTAGGCGATAAACTTGCACAGAGACGCTGTAAAATTTCTTATAAAGTGGGGATTTCCCCACAGCTTGGAGTTGATCGTGGTGACATTGTAGATATTCTCGTTAAGGTCGCAATGATGGAGTCTCGAGTCATTGTTCTGCACACTAATCCTGATTCAGGTCTCAAGGTTTTCTCTGTGGCACATTACCTTGGGATGATGGGGAATGGTTATGCGTGGATAGCTACTGATTGGCTCTCTTCTGTTCTAGATTCCTCTTCACCACTCCCCTCGGTGACCATGGATTCAATGCAAGGAGTTCTTGTGTTGCGCCAACACACACCAGATTCAGAAAGAAAGAGAGTGTTCTTCTCTAGATGGAACAAGTTGACCGGTGGATCTTTTGGGTTAAATTCTTATGGCCTGTACGCATATGATACTGTATGGCTAATTGCTCATGCACTTAATGCATTCTTTGATCAGGGTGGGACCATTTCATTTTCTAATGATTCGAGGTTACGTGATGTGGAGGGGGGGCATCTGCACCTCGAAGCAATGAGCATATTTGACAAAGGGAAGCTATTGCTAAATAATATATTGCATGCCAATCTAACTGGTCTAAGTGGTCCTATCCAGTTTGATTCAGACAGGTCTCTTGTTCATCCTGCATACGATGTCATTAATGTGATTGGAACCGGATTTCGACGAATTGGTTACTGGTCTAACTATTCTGGATTATCGGTTGTGCCTCCTGAGACACTCTACTTGAGGCCGCCTAATCGTTCCAGTGCAAACCAACAACTGTACAGTGTCATTTGGCCTGGGGAAACAACAATAAAGCCTCGTGGGTGGGTTTTCCCAAACTATGGGAAACAACTGAGAATAGGGGTCCCTAATCGGGTTAGTTACCGGGAATTCGTAGCACAAGTTAGAGGAACCGATACGGCCAAGGGGTTCTGCATAGATGTATTTACTAGTGCTTTAAACTTGCTACCATATGCTGTTCCCTATAAATTCATCCTCTATGGAGATGGTGATAAGAATCCGAGCTACACTGAGCTTACGAATATGATCACAGCAGACGTCTTTGATGCTGTCATAGGTGACATTGCGATTGTCACAAACCGGACAAGGATTGTGGATTTTACTCAACCATATATTGATTCTGGGCTCATTGTAGTAGCCCCAGTGAGGAAGTTGAACTCTGGTGGTTGGGCTTTCCTGCGGCCATTTACTCCAGAGATGTGGTGCGTGACTGGTGCATTCTTCCTTCTTGTAGGAGCAGTTGTATGGATCCTGGAGCATAGGACGAATGATGAGTTCAGGGGCCCTCCCAGAAAACAATTTATTACCATTTTATGGTTTAGCTTCTCAACTTTATTTTTTTCCCATAAAGAGAACACAGTGACAACCCTCGGTCGCTTGGTGCTGATCATATGGTTGTTTTTGGTTCTGATAATCAACTCGAGCTACACTGCAAGTTTGACTTCGATCCTCACTGTGCAACACCTATCTTCGCACATTAGTGGAATTGAAAGTTTGAGAACAAGCGATGATCCTATTGGATTCCAAGTGGGTTCCTTCGCTGAACGTTATCTAAGTGAGGAACTCGGCATCTCCAAATCTAGACTTGTCGCTCTTGGCTCACCAGAAGAATATGCTATAGCACTTGAACGTGGTCCTGGAAAGGGGGGTGTTGCTGCTGTGGTTGATGAAAGTCCATATGTGGATGTCTTCCTCTCAAGCCACTGTAAATTTAGAACTGTAGGCCAAGAGTTCACCAAAAGCGGGTGGGGATTCGCCTTCCCACGTGACTCTCCCTTAGCTGTCGACATGTCAACTGCAATTCTGAGACTAGCAGAGAATGGGGATCTCCAAAGGATCCACGATAAGTGGCTGACAAGAAGCACCTGCAGTTTAGAGAGCACTGAGCTCGAATCTGACCGACTTCACTTTAGGAGTTTCTGGGGCCTCTATCTCATTTGTGGAATAGCACTCTTTGTTTCTCTCTTCATATATTTCTTGCTGATGATCCGGCAGTTTAGACGGAGTTTCCGAAATGAATCTGATTCTACTGGTGAAGGTAGCTTGCGGTCTAAGAGCCTCCAGACTTTCTTATCGTTTGTTGATGAGAAGGAAGAGCAATCAAAGAGCAAGTCCAAGAGAAGACAAATGGAGAAATCTGCACACGACGAAGAGAATGAAGATGAATTGTGGACGAAGTCCAAGAGAAGACAGATAGAGATGTCCTCAAATAGCAGCACGAACTTTGGCAACTGA 2805 0.4446 MKVVWPLLLLVFYFGVLSNGASRNVSSRPDVVNIGAVFTINSTIGRVAKIAIEAAVEDVNSNSGVLGATKLNVHMKDSNCSGFTGIVEALKFMETDIVAIIGPQSSVIAHVISQVANELQVPLLSFAATDPTLSSHQFPFFVRTTQSDLYQMTAVAEVVDYYGWREVIAIFIDDDYGRNGIATLGDKLAQRRCKISYKVGISPQLGVDRGDIVDILVKVAMMESRVIVLHTNPDSGLKVFSVAHYLGMMGNGYAWIATDWLSSVLDSSSPLPSVTMDSMQGVLVLRQHTPDSERKRVFFSRWNKLTGGSFGLNSYGLYAYDTVWLIAHALNAFFDQGGTISFSNDSRLRDVEGGHLHLEAMSIFDKGKLLLNNILHANLTGLSGPIQFDSDRSLVHPAYDVINVIGTGFRRIGYWSNYSGLSVVPPETLYLRPPNRSSANQQLYSVIWPGETTIKPRGWVFPNYGKQLRIGVPNRVSYREFVAQVRGTDTAKGFCIDVFTSALNLLPYAVPYKFILYGDGDKNPSYTELTNMITADVFDAVIGDIAIVTNRTRIVDFTQPYIDSGLIVVAPVRKLNSGGWAFLRPFTPEMWCVTGAFFLLVGAVVWILEHRTNDEFRGPPRKQFITILWFSFSTLFFSHKENTVTTLGRLVLIIWLFLVLIINSSYTASLTSILTVQHLSSHISGIESLRTSDDPIGFQVGSFAERYLSEELGISKSRLVALGSPEEYAIALERGPGKGGVAAVVDESPYVDVFLSSHCKFRTVGQEFTKSGWGFAFPRDSPLAVDMSTAILRLAENGDLQRIHDKWLTRSTCSLESTELESDRLHFRSFWGLYLICGIALFVSLFIYFLLMIRQFRRSFRNESDSTGEGSLRSKSLQTFLSFVDEKEEQSKSKSKRRQMEKSAHDEENEDELWTKSKRRQIEMSSNSSTNFGN* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02460 934 Gene3D - 50 396 - -
Eupl03g02460 934 CDD GluR_Plant 466 808 - -
Eupl03g02460 934 FunFam Glutamate receptor 579 709 - -
Eupl03g02460 934 Gene3D - 774 807 - -
Eupl03g02460 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Eupl03g02460 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Eupl03g02460 934 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 319 331 - -
Eupl03g02460 934 FunFam Glutamate receptor 463 578 - -
Eupl03g02460 934 FunFam Glutamate receptor 705 812 - -
Eupl03g02460 934 FunFam Glutamate receptor 147 300 - -
Eupl03g02460 934 Pfam Bacterial extracellular solute-binding proteins, family 3 516 809 IPR001638 -
Eupl03g02460 934 SUPERFAMILY Periplasmic binding protein-like II 444 810 - -
Eupl03g02460 934 Gene3D - 578 703 - -
Eupl03g02460 934 Pfam Receptor family ligand binding region 50 406 IPR001828 -
Eupl03g02460 934 Pfam Ligand-gated ion channel 810 841 IPR001320 GO:0015276|GO:0016020
Eupl03g02460 934 Gene3D - 147 421 - -
Eupl03g02460 934 Gene3D - 463 577 - -
Eupl03g02460 934 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 893 IPR015683 -
Eupl03g02460 934 MobiDBLite consensus disorder prediction 920 934 - -
Eupl03g02460 934 SUPERFAMILY Periplasmic binding protein-like I 27 459 IPR028082 -
Eupl03g02460 934 CDD PBP1_GABAb_receptor_plant 33 425 IPR044440 -
Eupl03g02460 934 MobiDBLite consensus disorder prediction 885 919 - -
Eupl03g02460 934 PIRSF IGluLR_plant 1 933 IPR017103 -
Eupl03g02460 934 MobiDBLite consensus disorder prediction 883 934 - -
Eupl03g02460 934 Gene3D - 740 773 - -
Eupl03g02460 934 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02460 Eupl-Chr3 56428841 56437226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02460 1 928 Ion Channels AT1G42540 62.927 0.0 1227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02460 K05387 - csin:114286728 1395.95