Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02456 ATGGCAGAAATCTTGGACGGAAATTATGACGCTGGTAGCCAATCTGATGGGAGCTATCACCTTGATAGAACGCACATTGAGCCTATTTATGATGCATTTGTTTGCCCTCTAACAAAACAAGTAATGCGTGATCCCGTTACCTTAGAAAACGGGCAAACTTTCGAGCGAGAATCTATTGAAAATTGGTTCAAAGAGTGCAGGGAAAGCGGAAGGAAGTTACTTTGCCCTTTGACACTAAAGGAGTTAAAAAGCACCGATCTAAACCCTAGTATAGCTTTACGGAACACAATTGAAGAATGGACTGCAAGGAATGAATCTGTACAACTTGATATCGCTCGTAGATCGCTATATCCCGGCTGTTCAGAAAATGATGCTCTGCAAGCCTTGAGATATATCCATCACCTCTGCCAGAATAGCAGAGCAAATAAGCATGTTGTCCGTAATGCAGAGTTGATACCAATGATTATTGACATGTTAAGAAGCAGCAGCCGAAGAGTTCGGTGTAATGCCCTGGAAACCCTTCGTATTGTGGCTGAGGAGGATGCAGATAATAAGGAAGCAATGGCTGAAGGGGACACTATACGCACAATTGTTAAATTCTTGTCACATGAGCCTTCTAAGGAGAGGGAGGAGGCTGTGTTTTTGCTCTACGAGCTCTCAAAATCTGAAGCTTTGTGTGAAAAGATTGGCGCGGTCAATGGAGCAATCCTTATATTAGTTGGGATGGCGAGCAGCAAATCGGAGAATATTTTGACTATTGAGAAAGCTGACAAAACACTGGAAAATCTGGAGAAGTGTGAGAAAAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTTACACTCCTCCTTGAAGGCCCCCCTGAAACCAAATTGGCTATGGCTACTTACCTTGGCGAGCTGGTTCTGAGCAATGATGTGAAGGTCTTTGTGGCCAGAAGTGTGGGTTCATCGCTGGTGATTGTCATGAGAAGCGGCAACATACAGTCAAGAGAAGCCGCCCTGAAGGCTTTAAACCAGATTTCATCTTGCGAGGCAAGCGCCAAGGTGTTAATAGAAGCCGGGATCCTTCCCCCACTCGTCAAGGACCTTTTCACTGTTGGTGTCAATCAGCTTCCCATGAAGCTGAAGGAGGTTTCCGCAACAGTTCTTGCCAATGTTGTGAACTCGGGCTATGACTTTGATTCCATCCCACTCGGGCATGACCACCAGACTCTGGTCTCAGAAGACATAATCCACAACCTACTCCATCTCATCAGCAACACTGGCCCTGCCATCGAGGGCAAGCTCCTCCAGGTCCTTGTTGGTCTCACCAATTCTCCCACTACCGTTCTGAGTGTAGTTGCAGCCATTAAAAGCTCTGGTGCTACCATCAGCTTGATTCAGTTCGTTGAAGCTCCACAGAAGGATCTTCGTGTGGCTTCGATAAAACTCCTCCAGAACCTCTCGCCCCACATGGGTCAAGAGCTAGCTGATGCTCTACGAGATACTGCTGGTCAACTTGGCAGCCTGATCAAAGTTATCTCGGAGAACAATGGGATCACGGAAGAGCAGGCGGCAGCTGTTGGAATGTTAGCTGACTTTCCAGAGAGGGATTTGGGACTCACTCAGCAGCTGCTGCAAGAAGGTGCCTTTGAGGTGGTCATCTCCAGGGTGGTCAGGATCCAGCAAGGAGAGACCCGGGGTAGCCGCTTCATGACCCCATATCTTGAAGGTCTTGTGCGAGTCCTGGCAAGGCTCACATTCGTCTTGTCTGATGAACCTCGGGCTGTTGCCATGGCCCGCGAGCACAATCTTGCTGCACTATTCACCGATCTGCTTCAGACAAATGGACTTGACAAGGTACAGATGGTGTCTGCCATGGCTTTGGAGAACCTAGCACAAGAGTCTAAACGTCTGACACAACTGCCAGAGTTGCCAAAACCTGGTTTTTGTGCTTCTATCTTTCCATGTTTTAGCGAGCAACCAGTTGTGACTGGGTTGTGCCGCCTCCACCATGGAACCTGTTCATTGAAGGAGAATTTTTGTCTTTTAGAAGGAAAAGCTGTGGTGAAGTTGGTGGCCTGTTTAGACCACACAAACGAGAAGGTGGTTGAGGCAGCGCTAGCTGCACTGTGCACTTTGTTGGACGACGAGGTTGATGTTGAGCAAGGGGTGATGATCTTGTGTGAGGTGGAGGGAATCAAACCGATACTTGATGTGTTGCTTGAGAATCGGACGGAGATCCTGAGGCAGCGGTCAGTTTGGGCTGTTGAAAGGATTTTGAGGACTGAAGACATTGCATGTGATGTTTCTGGTGATCCAAATGTGAGTACTGCACTGGTTGATGCATTCCGGCACGGCGACTATCGGACTCGGCAGATTGCTGAGCGTGCCCTGAAACATGTTGATAAGATACCTAACTTCTCTGGCATATTTCAGAACATGGGTTAG 2442 0.4787 MAEILDGNYDAGSQSDGSYHLDRTHIEPIYDAFVCPLTKQVMRDPVTLENGQTFERESIENWFKECRESGRKLLCPLTLKELKSTDLNPSIALRNTIEEWTARNESVQLDIARRSLYPGCSENDALQALRYIHHLCQNSRANKHVVRNAELIPMIIDMLRSSSRRVRCNALETLRIVAEEDADNKEAMAEGDTIRTIVKFLSHEPSKEREEAVFLLYELSKSEALCEKIGAVNGAILILVGMASSKSENILTIEKADKTLENLEKCEKNVRQMAENGRLQPLLTLLLEGPPETKLAMATYLGELVLSNDVKVFVARSVGSSLVIVMRSGNIQSREAALKALNQISSCEASAKVLIEAGILPPLVKDLFTVGVNQLPMKLKEVSATVLANVVNSGYDFDSIPLGHDHQTLVSEDIIHNLLHLISNTGPAIEGKLLQVLVGLTNSPTTVLSVVAAIKSSGATISLIQFVEAPQKDLRVASIKLLQNLSPHMGQELADALRDTAGQLGSLIKVISENNGITEEQAAAVGMLADFPERDLGLTQQLLQEGAFEVVISRVVRIQQGETRGSRFMTPYLEGLVRVLARLTFVLSDEPRAVAMAREHNLAALFTDLLQTNGLDKVQMVSAMALENLAQESKRLTQLPELPKPGFCASIFPCFSEQPVVTGLCRLHHGTCSLKENFCLLEGKAVVKLVACLDHTNEKVVEAALAALCTLLDDEVDVEQGVMILCEVEGIKPILDVLLENRTEILRQRSVWAVERILRTEDIACDVSGDPNVSTALVDAFRHGDYRTRQIAERALKHVDKIPNFSGIFQNMG* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02456 813 CDD RING-Ubox_PUB 30 87 IPR045210 -
Eupl03g02456 813 SMART Ubox_2 32 100 IPR003613 GO:0004842|GO:0016567
Eupl03g02456 813 Gene3D - 573 804 IPR011989 -
Eupl03g02456 813 SUPERFAMILY RING/U-box 24 108 - -
Eupl03g02456 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 114 IPR013083 -
Eupl03g02456 813 SUPERFAMILY ARM repeat 122 444 IPR016024 -
Eupl03g02456 813 Coils Coil 253 276 - -
Eupl03g02456 813 SMART arm_5 717 759 IPR000225 GO:0005515
Eupl03g02456 813 SMART arm_5 266 306 IPR000225 GO:0005515
Eupl03g02456 813 SMART arm_5 589 631 IPR000225 GO:0005515
Eupl03g02456 813 SMART arm_5 139 179 IPR000225 GO:0005515
Eupl03g02456 813 SMART arm_5 672 713 IPR000225 GO:0005515
Eupl03g02456 813 SMART arm_5 181 221 IPR000225 GO:0005515
Eupl03g02456 813 SMART arm_5 347 392 IPR000225 GO:0005515
Eupl03g02456 813 SUPERFAMILY ARM repeat 322 801 IPR016024 -
Eupl03g02456 813 ProSiteProfiles U-box domain profile. 28 107 IPR003613 GO:0004842|GO:0016567
Eupl03g02456 813 Gene3D - 315 486 IPR011989 -
Eupl03g02456 813 Gene3D - 115 314 IPR011989 -
Eupl03g02456 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 809 - -
Eupl03g02456 813 Pfam U-box domain 31 105 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02456 Eupl-Chr3 56363491 56368149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02456 7 813 U-box Gene Family AT1G76390 64.030 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02456 - - msin:131243342 1303.89