Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02436 ATGAAAGGAGGCAAATCGAAGGCCAGTACGGCCAAAAAACCCGATAGCAAGCTATCTGTAAAGAGAAAAGGTGCCGTTACCGACAGGGCTGGTAAAAAGCCAGCGAAGAAGGAAAAGCCAGTGAAGGATCCAAACAAGCCTAAAAGGCCTGCTAGTGCCTTTTTCGTTTTCATGGAGGAGTTCAGGAAGTCGTTCAAGGAAAAACACCCTAACAACAAATCCGTCTCCGTTGTTGGCAAAGCCGGTGGAGATAAATGGAAGTCGTTGTCAGAAGCTGAGAAAGCTCCGTATGTAGCGAAGGCTGAGAAGAGGAAGACCGAATACAACAAGAACTTGCAGGCTTACAACAAGAAACAGGCCGAAGGAGCAAATGCGGCTGAAGACGAAGACGAGTCTGACAAGTCGAAGTCTGAGGTGAACGATGAGGATGATGAAGATGAAAGTGGAGAGGTTAGCAGAAACTTTATTTCTCTCACTTATTTTAACATCAAAGCATAA 498 0.4558 MKGGKSKASTAKKPDSKLSVKRKGAVTDRAGKKPAKKEKPVKDPNKPKRPASAFFVFMEEFRKSFKEKHPNNKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKNLQAYNKKQAEGANAAEDEDESDKSKSEVNDEDDEDESGEVSRNFISLTYFNIKA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02436 165 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 148 IPR031061 -
Eupl03g02436 165 MobiDBLite consensus disorder prediction 8 46 - -
Eupl03g02436 165 Gene3D High mobility group box domain 30 133 IPR036910 -
Eupl03g02436 165 SMART hmgende2 46 117 IPR009071 -
Eupl03g02436 165 MobiDBLite consensus disorder prediction 66 151 - -
Eupl03g02436 165 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 47 116 IPR009071 -
Eupl03g02436 165 MobiDBLite consensus disorder prediction 134 149 - -
Eupl03g02436 165 CDD HMG-box_AtHMGB1-like 48 108 - -
Eupl03g02436 165 SUPERFAMILY HMG-box 34 121 IPR036910 -
Eupl03g02436 165 Coils Coil 98 118 - -
Eupl03g02436 165 MobiDBLite consensus disorder prediction 1 50 - -
Eupl03g02436 165 MobiDBLite consensus disorder prediction 86 111 - -
Eupl03g02436 165 Pfam HMG (high mobility group) box 47 116 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02436 Eupl-Chr3 56164399 56167191 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Eupl03g02436 HMG_box 5.6e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02436 K25507 - psom:113289610 200.675