Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02420 ATGGAAGATGGCGTTTTTCCACCAGATACTATGTTGGGGACCCTCTCGGACACCGCAATGGATTTCGATCTCATGGATGAACTCTTGTTAGGAGGATGCTGGTTGGAGACTACTGAAGGATCGGATTTCTTGCAACCGGGTCCCTCTAATTCCGCTTCCCTCTTCAACTCTTCGTATTTTTTACCTACTTCAGAGATTAATAGTGGCCGCTTGAATGTAAACCCACCTCAAAACAACAGCCAGGAAGAGACAGAAAGATCAGTTGTCGTCAACAATCCACCTTCTGTTGAACCCCAAACAGAAAACTCCATTGGAACTCAATCTCTAAACCAGAATACTGTAGCAATTGGCGAGTGTTCTGGCCAGTTGGAGTATTCTCCGGTTGAAGGAAGCTCTGAACTGAGCAGAAGGTGGTGGATCGAACCGAGGGCGAATCCAGGTCCTGTTTCTTCTGTGAGACAGAGGTTAATCCAGGCACTTGGATACATAGAAAATTCCACAAAAAATGGAGATGTCCTTGTACAGATTTGGGTGCCAATAGAGAGAGGAGGCAAACATGTTCTTACTACTAATGACCAACCGTTCTCGCTCAATCCTAACTGCCAGAGGCTTGTAAGTTACAGAAATGTCTCTGAGAACTACCAGTTCCCAGCTGAGGAGGGTTCAAATGAGTCGGTCGGGTTGCCTGGCCGAGTTTTCTTGGGGAAGGTGCCTGAGTGGACCCCTGATGTTCAATTCTTCAGCAGCAATGAGTATCACCGAATTGATTATGCTCAACAGTGTGATGTTCGTGGGACCCTCGCGATTCCCATTTTCCAACGAGGTAGTCAGTCTTGCTTAGGTGTTGTGGAGGTCGTGATGACTACACGAAAGATCAATTATCATCCTGAGCTCGAAAATGTCTGCAAGGCTCTTGAGGCTGTTGATCTGACTAGTTCTGAAGTTTCAAGTACTCCCCATGCAAAGGAATGCAATGAGTCCTACCAAACTGCACTGCCTGAGATTCTAGAGGTCCTGGGAGCTGCCTGTGAGACACATAGATTACCCTTAGCTCAGACTTGGGCCTCGTGCTTCCAACAAGGTAAGGGGGGATGCCGACATTCCAATGAGAACTACGCTTATTGTGTTTCCACAGTGGATTCTGCTTGCTATGTCACCGATCCCCGTATTAGGGGCTTTCATCAGGCTTGCTCTGAGCACCACCTCTTTAGAGGCCAAGGCGTTGCTGGAAGAGCATTCACGACGAACCAACCATGCTTCTCCAATGACATAAGCTTGCTCAGCAAGGAGGAATATCCTCTCTCTCACTATGCAAGGATGTTTGGCTTGCGGGCTGCTGTCGCAATCCGCCTGCGGAGCATCTACACTGGAACAGCCGATTATGTCTTGGAGTTCTTCTTACCTGTGGATTGCCGAGACACTGAAGAACAGAAGATGATGCTCAATTCCTTGTCCATCATCATACAACGGGTTTGCCAAAGCTTACGGGTCATCACAGATAAGGAGCTAGAGGAAGAAACTATTTTGCGTGTTAGTGAAGTAGTCCCTTCAGAAGGGGGACCCAACAGAGAAGATGTGCCAAAGTTAGGAGCTTCTCAGTCTAAAGGTTCTTCTCAGGAAGAATCATCCTCGATTGCCCGTATGTTGGAGGCCCAACAGAAGGGTAAAAGTGTCCAAAAAGAGGAGGCGGCAGAAGCTTTCGAAGTAACAACTCATTGGAATGACCCGGAGGTGGTATTACAGCAGAGGCAAACATTCTCTGACTTTAAGCAGCATCACCAAGATTCCAAGCTCAAAGATAATGTTGAGTGTGGTGGGGATTCTTCTTCTTTTGGTGAGCTTAGCTTTTCGAGTGGGAGTAAAACAGGAGAGAAGAGACGGACCAAGACGGAGAAGACCATCAGCTTGCCAGTTCTTCGACAATACTTTGCTGGGAGCCTCAAAGATGCAGCAAAGAGTATTGGCGTGTGCCCAACTACTCTGAAAAGGATATGCAGGCAACATGGGATAACCCGATGGCCTTCTCGAAAGATCAAGAAAGTGGGTCACTCTTTAAGGAAACTCCAGGTTGTTATTGACTCGGTCCAGGGTGCAGAGGGTGCTTTCCAAATTGGTTCCTTCTATGCAAACTTCCCAGAATTGACCTCCCCAAATTTATCTGGAACCAATCCATTTTCCACATCGAATCCGAATGATCATCTGAAGCTGTTAAACACGCAATCAGAGGGCATATTCAGCCCTCGAGCAGCTGCATCGAAATCACCCTCCTCTTCAGGCAGTCAGAGCTCCAGTTCAAGCCTCTGCTGTTCCAGTGCTAAACAGCAGCATCCTCACATTCCCCATCTCACAGGTAGTGAAGATGCTTCGATGGCGGAAAACCCTGGTGGTGTACTAAAGCGAGCACGTAGTGATGCAGAGTTGCATGCCTTGAGTCAAGAGGAACCAAGGCTTCTGGCAAGATCCCACAGCCACAAATCTCTCAGTGAGCATCCTAGTCTCCAAAGTCTACCTCCCTTGCCTAAGGGTAGTAGTCGTGTATCTCGTGACAGGGGTTCTCCTAGAGTGAAAGTCGCTTTTGGGGAAGAGAAAGTTCGGTTCAGCGTGCAACCCAATTGGGGCTTTAAAGATTTACAACAAGAGATTGCAAAGCGATTTCATATAGATGATATGAGCAGAATTGATCTCAAGTACTTAGACGATGACTCCGAGTGGGTCCTGTTAACATGTGATGCTGATCTAGAGGAGTGTATGGACATATACAAATCATCTCGGATCCACACAATAAAACTCTCCATCCACCAAGTTTCTCATCCCAATCTGGGCAGTTCTTTGGGTAGCAGCGGCCTATCCTGA 2853 0.4742 MEDGVFPPDTMLGTLSDTAMDFDLMDELLLGGCWLETTEGSDFLQPGPSNSASLFNSSYFLPTSEINSGRLNVNPPQNNSQEETERSVVVNNPPSVEPQTENSIGTQSLNQNTVAIGECSGQLEYSPVEGSSELSRRWWIEPRANPGPVSSVRQRLIQALGYIENSTKNGDVLVQIWVPIERGGKHVLTTNDQPFSLNPNCQRLVSYRNVSENYQFPAEEGSNESVGLPGRVFLGKVPEWTPDVQFFSSNEYHRIDYAQQCDVRGTLAIPIFQRGSQSCLGVVEVVMTTRKINYHPELENVCKALEAVDLTSSEVSSTPHAKECNESYQTALPEILEVLGAACETHRLPLAQTWASCFQQGKGGCRHSNENYAYCVSTVDSACYVTDPRIRGFHQACSEHHLFRGQGVAGRAFTTNQPCFSNDISLLSKEEYPLSHYARMFGLRAAVAIRLRSIYTGTADYVLEFFLPVDCRDTEEQKMMLNSLSIIIQRVCQSLRVITDKELEEETILRVSEVVPSEGGPNREDVPKLGASQSKGSSQEESSSIARMLEAQQKGKSVQKEEAAEAFEVTTHWNDPEVVLQQRQTFSDFKQHHQDSKLKDNVECGGDSSSFGELSFSSGSKTGEKRRTKTEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQVVIDSVQGAEGAFQIGSFYANFPELTSPNLSGTNPFSTSNPNDHLKLLNTQSEGIFSPRAAASKSPSSSGSQSSSSSLCCSSAKQQHPHIPHLTGSEDASMAENPGGVLKRARSDAELHALSQEEPRLLARSHSHKSLSEHPSLQSLPPLPKGSSRVSRDRGSPRVKVAFGEEKVRFSVQPNWGFKDLQQEIAKRFHIDDMSRIDLKYLDDDSEWVLLTCDADLEECMDIYKSSRIHTIKLSIHQVSHPNLGSSLGSSGLS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02420 950 ProSiteProfiles RWP-RK domain profile. 620 701 IPR003035 -
Eupl03g02420 950 Gene3D - 852 934 - -
Eupl03g02420 950 ProSiteProfiles PB1 domain profile. 852 935 IPR000270 GO:0005515
Eupl03g02420 950 MobiDBLite consensus disorder prediction 514 556 - -
Eupl03g02420 950 MobiDBLite consensus disorder prediction 531 550 - -
Eupl03g02420 950 MobiDBLite consensus disorder prediction 748 778 - -
Eupl03g02420 950 MobiDBLite consensus disorder prediction 597 629 - -
Eupl03g02420 950 Pfam RWP-RK domain 634 681 IPR003035 -
Eupl03g02420 950 MobiDBLite consensus disorder prediction 66 106 - -
Eupl03g02420 950 SUPERFAMILY CAD & PB1 domains 843 938 - -
Eupl03g02420 950 PANTHER PROTEIN NLP8 76 948 IPR045012 GO:0003700
Eupl03g02420 950 SMART PB1_new 852 935 IPR000270 GO:0005515
Eupl03g02420 950 CDD PB1_NLP 854 934 IPR034891 -
Eupl03g02420 950 MobiDBLite consensus disorder prediction 748 794 - -
Eupl03g02420 950 Pfam PB1 domain 854 934 IPR000270 GO:0005515
Eupl03g02420 950 MobiDBLite consensus disorder prediction 818 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02420 Eupl-Chr3 55869998 55876818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02420 6 949 NLP Transcription Factor Family AT4G35270 48.967 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Eupl03g02420 PB1 1.6e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02420 - - nnu:104603759 1196.8