Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02413 ATGAACACCACGACAGATTCTCCTAATTCCTCTAGGCAAGAAAGCTTTGGAGGCTTCAGGCCTCATACCGCCTGCAAAATCAATGCCGGAGTATCCCATGAAAATCTTAGGAAGAAAAGATCGAAACTCATCCGAATTGGCGATCCTGTCCCGAGACTCCCAACAAATTCGAATAGCTTTTTGAAGCCAAAATTTGGAAAGAAACCGGAACCCGGTGCTCCAAAGATCATTCTCCCGTGTAGTGAATGTGGTAAGCAATTTTGGTCCTGGAAGGCCCTATTTGGCCATATGAGGTGCCACCCTGAGCGTCAATGGCGCGGAATAAATCCCCCGCCAAAATTTCGGCAACCGGTGTCACCAGAAAACCGAGGACCAGGTCCTGGAGCAAAATTGACCGAGGAGGATCAGGAGGTTGCGACATATCTAATAATGCTGGCAAATGGGTCTACTGCAACAGATACATCGCGTGTTACCATCGTCAATCAAGGCATGTTGGAACCTTGTAACACAATCATAGAACCATATTGGGCAGCAGATGTGGACGGCATTGAATTATCGGGTTTGAACTGTCGATTCAAGTGTTCAAGTTGTAAAAAAGTGTTTGGGTCACACCAGGCACTAGGGGGGCACAGGGCTACTCACAAGAACGTCAAGGGTTGTTTTGCGATAGCGAGGAATGAAGGCGAAGACAATGATCACGACAGCATTTACGTAGACGAGGGCGACGTCAAAGGTAACGGTGACGGTGATGGCGACGACAGAAGTAGAGGTGCAGGAGAGAAAATGGATACAGTTTTAGGACGCAAGTGTAGTATATGTTTTAGGGTTTTCTCTAGTGGTCAAGCCCTTGGTGGGCACATGAGGTGCCATTGGGAGAAAGGGGAGGAATCACCACCACAAGGGTTGAACCCTTGTGTGTTGGACTTGAATTTGCCTGCCCCAATAGAAACTGGTCAGGGCTCTTCTTCATCTTTTGACCATGATTTAGATCTAAGGTTGGGGATTTGA 1008 0.4762 MNTTTDSPNSSRQESFGGFRPHTACKINAGVSHENLRKKRSKLIRIGDPVPRLPTNSNSFLKPKFGKKPEPGAPKIILPCSECGKQFWSWKALFGHMRCHPERQWRGINPPPKFRQPVSPENRGPGPGAKLTEEDQEVATYLIMLANGSTATDTSRVTIVNQGMLEPCNTIIEPYWAADVDGIELSGLNCRFKCSSCKKVFGSHQALGGHRATHKNVKGCFAIARNEGEDNDHDSIYVDEGDVKGNGDGDGDDRSRGAGEKMDTVLGRKCSICFRVFSSGQALGGHMRCHWEKGEESPPQGLNPCVLDLNLPAPIETGQGSSSSFDHDLDLRLGI* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02413 335 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 11 334 - -
Eupl03g02413 335 MobiDBLite consensus disorder prediction 1 17 - -
Eupl03g02413 335 MobiDBLite consensus disorder prediction 1 22 - -
Eupl03g02413 335 SUPERFAMILY beta-beta-alpha zinc fingers 79 214 IPR036236 -
Eupl03g02413 335 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Eupl03g02413 335 ProSitePatterns Zinc finger C2H2 type domain signature. 270 290 IPR013087 -
Eupl03g02413 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 219 IPR013087 -
Eupl03g02413 335 SMART c2h2final6 268 290 IPR013087 -
Eupl03g02413 335 SMART c2h2final6 192 214 IPR013087 -
Eupl03g02413 335 SMART c2h2final6 78 100 IPR013087 -
Eupl03g02413 335 MobiDBLite consensus disorder prediction 47 68 - -
Eupl03g02413 335 Pfam C2H2-type zinc finger 80 102 - -
Eupl03g02413 335 Pfam C2H2-type zinc finger 191 215 - -
Eupl03g02413 335 Pfam C2H2-type zinc finger 269 292 - -
Eupl03g02413 335 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Eupl03g02413 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Eupl03g02413 335 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 295 IPR013087 -
Eupl03g02413 335 Gene3D Classic Zinc Finger 190 290 - -
Eupl03g02413 335 MobiDBLite consensus disorder prediction 107 130 - -
Eupl03g02413 335 MobiDBLite consensus disorder prediction 232 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02413 Eupl-Chr3 55761095 55762145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02413 65 335 C2H2 Transcription Factor Family AT4G35280 47.101 1.84e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl03g02413 zf-C2H2_6 4.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02413 - - csin:114277591 330.487