Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02411 ATGGGGTCCGACGGCGATTCCGGCAGTTCGAGCGACTTGGGCGTGGTTGGTGAAGTCACCGTGCACGTCCGGTGCTCGAACGGTTCGAAGTTCTCCGTGCAGACCAGCCTTGAATCTACGGTTGCGTCATTCAAAGCCGTTCTGGCGCAGAATTCCGATGTCCCGGTAGAACAACAACGGTTGATTTATAAGGGTCGGATCCTGAAGGACGACCAAACCCTAGAAAGCTATGGTTTGCAGGCAGATCACACTGTTCACATGGTTCGTGGTTTACCAGCTGCATCAACCAACACTACCGGTGCAGCCAATCTTGGAGGTACAAACACTACCCCAGGTGTTGCAAGGGGTGTTGGTTCCAATGAAGGTGGGGGCTTTGAAGGAGCTGGTCTTGGAACCTCTCTGTTTCCTGGACTTGGTGTCAATGGCCTTGGTGGCAGTGGAGTTTCTGGTTTATTTGGAACTGGACTTCCAGAGTTTGAACAGGTCCAGCAACAGCTGACCCAGAACCCCAACATGATGAGGGAAATAATGAACATGCCTGTCATCCAGAACCTAATGAATAACCCTGACCTAATGCGCAGCTTGATTATGAGCAATCCCCAAATGCGTGAGATCATTGATCGGAACCCTGACCTTGCTCATATACTTAATGATCCCAGTACTCTCCGGCAGACATTAGAAGCTGCAAGGAACCCTGAACTCATGCGGGAGATGATGCGGAACACTGACAGGGCAATGAGCAACATTGAATCTTCTCCTGAAGGATTTAACATGCTCAGGCGAATGTATGAAACTGTTCAGGAGCCATTTTTGAACGCGACAACGATGGCCGGAGACACTGGAAATGATATAGGTTCAAACCCATTTGCTGCCCTTTTGGGTAACCGAAGTGGGGTCCAGGGCAGGGATCGATCTACTAACCCTTCAACGACCGGTTCTGAAACAACTACTGGGTCTCCTGCACCAAATACTAACCCGCTTCCCAACCCATGGAGCAGCGGTGGTGCTGCAGGAGGTGTGCAGACAAACACCACAACAAGGTCAAGTCCAGCTGGGGATGCAAGGGTGCCTGGTGTTGCTGGCTTAGGTGGGGTTGGTCTCCCAGAGATGGAACGAATGTTTAGTGGCATGCAGGATTCTTCTCAATTGAATCAGTTTATGCAAAATCCAGCTGTGTCACAGATAATGCAAAGCCTCCTCTCTAACCCTCAGTACATGAACCAGATTCTTGGTCTCAACCCCCAACTGCGCGGCATGCTTGATTCTAATTCCCAGTTAAGAGAAATGATGCAAAACCCAGAATTTCTTCGCCAGTTGACTTCTCCTGAGACAATGCAGCAAGTTTTGGCTTTACAGCAATCGCTTCTATCCCATGGTCGGCAACAATCAACCCAGGAACCAGGTCAGACTGGTGCTGGCACAGGAACACCGAACAACATGGGGTTGGATTTGTTGATGAACATGTTCGGCGGACTTGGGGCTGGTGGCCTGACTGTTCCAAACACATCTGATGTGCCACCAGAGCAACTTTATGCGACACAGCTGTCACAGCTTCAAGAAATGGGATTCTTTGACACCCAAGAGAATATCCGCGCGCTGAGTGCCACTGCAGGGAATGTCCACGCTGCAGTGGAGCGACTTTTGGGAAACCTGGGTCAGTAA 1662 0.5048 MGSDGDSGSSSDLGVVGEVTVHVRCSNGSKFSVQTSLESTVASFKAVLAQNSDVPVEQQRLIYKGRILKDDQTLESYGLQADHTVHMVRGLPAASTNTTGAANLGGTNTTPGVARGVGSNEGGGFEGAGLGTSLFPGLGVNGLGGSGVSGLFGTGLPEFEQVQQQLTQNPNMMREIMNMPVIQNLMNNPDLMRSLIMSNPQMREIIDRNPDLAHILNDPSTLRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMAGDTGNDIGSNPFAALLGNRSGVQGRDRSTNPSTTGSETTTGSPAPNTNPLPNPWSSGGAAGGVQTNTTTRSSPAGDARVPGVAGLGGVGLPEMERMFSGMQDSSQLNQFMQNPAVSQIMQSLLSNPQYMNQILGLNPQLRGMLDSNSQLREMMQNPEFLRQLTSPETMQQVLALQQSLLSHGRQQSTQEPGQTGAGTGTPNNMGLDLLMNMFGGLGAGGLTVPNTSDVPPEQLYATQLSQLQEMGFFDTQENIRALSATAGNVHAAVERLLGNLGQ* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02411 553 SUPERFAMILY UBA-like 507 549 IPR009060 GO:0005515
Eupl03g02411 553 MobiDBLite consensus disorder prediction 287 363 - -
Eupl03g02411 553 PANTHER UBIQUILIN 19 548 IPR015496 -
Eupl03g02411 553 FunFam Ubiquitin domain-containing protein DSK2b 494 552 - -
Eupl03g02411 553 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Eupl03g02411 553 Gene3D - 17 103 - -
Eupl03g02411 553 SMART ubq_7 19 90 IPR000626 GO:0005515
Eupl03g02411 553 ProSiteProfiles Ubiquitin domain profile. 19 94 IPR000626 GO:0005515
Eupl03g02411 553 FunFam Ubiquitin domain-containing protein DSK2b 16 103 - -
Eupl03g02411 553 SUPERFAMILY Ubiquitin-like 10 100 IPR029071 -
Eupl03g02411 553 PRINTS Ubiquitin signature 71 92 IPR019956 -
Eupl03g02411 553 PRINTS Ubiquitin signature 50 70 IPR019956 -
Eupl03g02411 553 SMART CBM 199 238 IPR006636 -
Eupl03g02411 553 SMART CBM 370 409 IPR006636 -
Eupl03g02411 553 SMART CBM 145 186 IPR006636 -
Eupl03g02411 553 SMART CBM 413 448 IPR006636 -
Eupl03g02411 553 MobiDBLite consensus disorder prediction 299 351 - -
Eupl03g02411 553 SMART uba_6 511 549 IPR015940 -
Eupl03g02411 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 505 550 IPR015940 -
Eupl03g02411 553 CDD UBA_PLICs 511 549 - -
Eupl03g02411 553 Gene3D - 493 552 - -
Eupl03g02411 553 MobiDBLite consensus disorder prediction 455 479 - -
Eupl03g02411 553 Pfam UBA/TS-N domain 511 547 IPR015940 -
Eupl03g02411 553 CDD Ubl_Dsk2p_like 19 90 - -
Eupl03g02411 553 Pfam Ubiquitin family 21 89 IPR000626 GO:0005515
Eupl03g02411 553 Gene3D - 192 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02411 Eupl-Chr3 55708557 55720354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02411 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 6.21e-08 50.1