Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02409 ATGGTGATGGAGGGAGGAGGAGGAGGAGAGGGTTTGGAGATTGGGAATATCTCGAATGCATCGAAGGCCAACCAAGAGGAGAGCGATGTGATTCAGGGAGTGATGAATGTGATTGACGCCCTCGGATCGTTCGCGGATTACCGAAGGACGCAGAGGAAGGAGTCCTTTAACCTCGTGAGGCGGATGAAGCTGTTGGTGCCTCTCCTGGAAGAGCTCAGCGAGCTCGACAGGCCAATTCCGGATGAGGCTTCGACGTGTTTGTCTAACTTGAAGAAGGCGCTTAATTCCGTGAAAAAATTGTTAAAGATTTGTCACGATGGGAGCAAGATTTTCCTGGCATTGGAGAGCGAGGTGTTCATGGGCAGATTTCATGCCGTTTATGATAAATTAAATCAGGCATTGGATGGTATGCCTTATGATGAGCTTGAGATCTCAGATGAAGTGAAAGAGCAAGTTGAGCTCATGCGTGTGCAACTTAAAAGAGCAAAGAGGCGAACAGATACTCAGGATATAGAACTTGCAATGGATATGATGGTTGTATTCTCTAAAAATGATGACCGTAACGCAGACAGTGCCATACTGGAAAGGCTAGCAAAGAAGCTGGAGCTACATACTATTCCAGACTTGAAGGCAGAAACCATAGCTGTGAGGAAACTTATTAAAGAAAGAAATGGGCAAAATGCAGAGAGCACCCAGCAGATCATAGATCTTCTGACCAAATTCAAACAAATAGCCGGGCTTGAGGAGTCCAACGTGCTCAATGATCTTGCTGCGCCAAAAAGACTTGAGAAATGCTTGTCATTGGCAATCCCTCATGAATTCCTCTGTCCGATAACACTAGAGATCATGACGGATCCCGTTATCGTTGCTTCTGGTCAGACATATGAGAGGGAAAGCATACAGAAGTGGTTGGAGTCAAACCATAGGACCTGCCCAAAGACTAGGCAAACATTGGCTCACTTATCTCTAGCTCCGAACTTTGCCCTCCGCAACCTCATTCTGCAGTGGTGCGAGAAGAACAAGTTTGAACTTCCTAAAAAGGAAGCAAGTATGGATGCCGACAGCTCCTTCACGGAACACAAAGAGGAAATCACTTCCTTGGTCCAAAACTTGTTCTCTAGTCAGCTGGATGTGCAGAGAAAGGCTGTGAAGAAGATCCGTATGCTCTCCAAAGAGAACCCCGACAATAGAGTCGTGATTGCTAGCAGTGGAGGAATCCCCCCTCTGGTTCAACTCCTGTACTATCCAGATTCCAAGATCCAAGAGCACACTGTAACAGCTCTGCTGAACTTATCGATTGATGAGGCAAACAAGAGACTCATAGCAAAAGAAGGAGCCATTCCAGCTATAATTGAAGTGTTGCAGAAAGGAACAGTGGAGGCTAGAGAGAATTCCGCAGCATGCTTATTCAGTTTATCCATTCTTGATGAAAACAAAGTGGCAGTTGGGTCTTTGAATGGCATCCCACCTTTGGTATCTCTATTGCAGAATGGGACAATCAGGGGTAAAAAAGATGCTGCAACTGCCCTCTTTAACTTATCTCTTAACCAAACAAACAAGGCCAGAGCCATTAATGCAGGAATCGTAAAACCCTTACTTCAGTTACTCACAGATAAAAACTTGGGCATGGTAGATGAGGCCCTCTCAATCTTGTTACTCCTTGCATCGCACCCTGAAGGCCGGAATGCAATTGGACAGCTTTCATTTATAGAAACTCTTGTCGAGTTCATCAGAAATGGGACCCCCAAGAACAAGGAATGTGCAATATCGGTTCTTCTTGAGTTGGGATTGAACAATTCATCTTTCATTCTGGCTGCACTTCAGTTTGGTGTGTATGATCATTTGATAGAGATTGCAAGGAGTGGAACCAGCAGAGCCCAAAGAAAAGCAAACTCCCTTCTGCAGCACATGAGTAAATGTGAACACATTCCCTGA 1935 0.4532 MVMEGGGGGEGLEIGNISNASKANQEESDVIQGVMNVIDALGSFADYRRTQRKESFNLVRRMKLLVPLLEELSELDRPIPDEASTCLSNLKKALNSVKKLLKICHDGSKIFLALESEVFMGRFHAVYDKLNQALDGMPYDELEISDEVKEQVELMRVQLKRAKRRTDTQDIELAMDMMVVFSKNDDRNADSAILERLAKKLELHTIPDLKAETIAVRKLIKERNGQNAESTQQIIDLLTKFKQIAGLEESNVLNDLAAPKRLEKCLSLAIPHEFLCPITLEIMTDPVIVASGQTYERESIQKWLESNHRTCPKTRQTLAHLSLAPNFALRNLILQWCEKNKFELPKKEASMDADSSFTEHKEEITSLVQNLFSSQLDVQRKAVKKIRMLSKENPDNRVVIASSGGIPPLVQLLYYPDSKIQEHTVTALLNLSIDEANKRLIAKEGAIPAIIEVLQKGTVEARENSAACLFSLSILDENKVAVGSLNGIPPLVSLLQNGTIRGKKDAATALFNLSLNQTNKARAINAGIVKPLLQLLTDKNLGMVDEALSILLLLASHPEGRNAIGQLSFIETLVEFIRNGTPKNKECAISVLLELGLNNSSFILAALQFGVYDHLIEIARSGTSRAQRKANSLLQHMSKCEHIP* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02409 644 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 343 IPR013083 -
Eupl03g02409 644 PANTHER U BOX DOMAIN-CONTAINING 52 640 - -
Eupl03g02409 644 FunFam RING-type E3 ubiquitin transferase 27 140 - -
Eupl03g02409 644 Coils Coil 145 165 - -
Eupl03g02409 644 FunFam RING-type E3 ubiquitin transferase 347 643 - -
Eupl03g02409 644 FunFam RING-type E3 ubiquitin transferase 269 344 - -
Eupl03g02409 644 SUPERFAMILY RING/U-box 268 344 - -
Eupl03g02409 644 CDD RING-Ubox_PUB 271 323 IPR045210 -
Eupl03g02409 644 Gene3D - 26 138 IPR036537 GO:0007166
Eupl03g02409 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Eupl03g02409 644 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Eupl03g02409 644 SMART arm_5 393 433 IPR000225 GO:0005515
Eupl03g02409 644 SMART arm_5 516 556 IPR000225 GO:0005515
Eupl03g02409 644 SMART arm_5 475 515 IPR000225 GO:0005515
Eupl03g02409 644 SMART arm_5 557 597 IPR000225 GO:0005515
Eupl03g02409 644 SMART arm_5 434 474 IPR000225 GO:0005515
Eupl03g02409 644 Pfam U-box domain 270 341 IPR003613 GO:0004842|GO:0016567
Eupl03g02409 644 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Eupl03g02409 644 SUPERFAMILY ARM repeat 364 639 IPR016024 -
Eupl03g02409 644 Gene3D - 344 643 IPR011989 -
Eupl03g02409 644 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Eupl03g02409 644 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Eupl03g02409 644 Pfam Armadillo/beta-catenin-like repeat 476 514 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02409 Eupl-Chr3 55681418 55685845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02409 30 643 U-box Gene Family AT5G42340 64.821 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02409 - - tss:122662857 994.956