Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02397 ATGACGAAGAGATCGCTGGGAAAGGCGAAGAAACACGTAGAATTCTACGAAGTAGAAGAGGATACTGAAGAAGAGGAGGAGGAGGTGGAAGAGAGGAGGAAGAGGGTTTTAATTAGGTTTTCTGGAGATAGTAGAAGCTCGGTGAGTTCTCAAACAACGCTTTCCTGTCAGGCCGACGATTGCGATGCAGAGTTGGGTACCTCGAGGAGGTACCACCGGCGACATAAGGTGTGCGAGCGGCACGCGAAGGCGGCGGTCGTTTTGGTCGGTGGCGTCGATCAGAGGTATTGCCAACAGTGCAGCAGATTCCACGAAATATCACAATTTGATGATGCAAAAAGGAGTTGCCGGAAACAGCTGGCCGGCCACAATCAACGCCGGAGGAAGACCCATCCAGACCTACAGGTAGAGGATGTAGGACAGAAACCAGCAGTCCCAACAACGAATGATAGGTCATGGAAACACGCACGTCACCCTGAGCACATGCGAATGAGACTTCAAGGGAACCCCAGTTTCAAGCATTTTCAAATTTGGTGA 537 0.5084 MTKRSLGKAKKHVEFYEVEEDTEEEEEEVEERRKRVLIRFSGDSRSSVSSQTTLSCQADDCDAELGTSRRYHRRHKVCERHAKAAVVLVGGVDQRYCQQCSRFHEISQFDDAKRSCRKQLAGHNQRRRKTHPDLQVEDVGQKPAVPTTNDRSWKHARHPEHMRMRLQGNPSFKHFQIW* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02397 178 MobiDBLite consensus disorder prediction 120 156 - -
Eupl03g02397 178 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Eupl03g02397 178 Coils Coil 19 39 - -
Eupl03g02397 178 ProSiteProfiles Zinc finger SBP-type profile. 53 130 IPR004333 GO:0003677
Eupl03g02397 178 Gene3D - 39 117 IPR036893 GO:0003677|GO:0005634
Eupl03g02397 178 Pfam SBP domain 56 129 IPR004333 GO:0003677
Eupl03g02397 178 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 38 133 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02397 Eupl-Chr3 55546459 55550551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02397 32 142 SBP-box Gene Family AT3G15270 52.252 9.49e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl03g02397 SBP 1.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02397 - - msin:131237052 174.481