Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl03g02360 ATGGGGCACGATAGGATGTGGATCGACCCCAAAAGTGGCTTCTGCGAGTCGAACTCCATCTTCTACAGCAAGAGAAAACCATTACTTCTCCCCTCCAATGAATATCTCGACATCACCACCTTCATCTCTTCCCATGTTCACCATGGAAAGATCGCCTTCATCGACGCCTCCACTGGCCGCCACCTCACCTACAAACAGCTATGGCGAGCAGTTGATTCAGTCACCACATGTCTATCCGAAATGGGTATCTGCAAAGGCCACGTTGTCCTTGTCCTCTCGCCAAATTCCATATTTTTCCCCATAATCTGTTTTTCTGTCTTGACTCTTGGCGCTATTGTTACCACAACCAACCCGCTCAACACACCCCATGAAATCGGTATTCAAATCGCCGATTCCAAACCGATTCTAGCCTTTACCACTCAGTTTCTCCTCTCAAAACTCGCTGGTACAGAAATTCCTATCGTTCTCATAGGAGAACATGATAACTCGGCCAGTAACACAAGAATTGTTTCTTCCCTGGAAGACATGATGAAGAAAGAGCCGAGTCAAAGCCGAATCAAAGAGCGAGTCAGCCAAGACGACTTAGCGACTCTGTTGTACTCTTCTGGGACGACCGGTAGGAGTAAAGGTGTAATGTCGTCGCATCGGAGTCTAATAGTGATGGTTCAAAATGTCATGAGTCGGATACAATCAGAAAACGGAGCGCAAACTGTCCTTTCTACAGTCCCCATGTTCCACCTGTATGGCTTTGCGTGGTTCGTAATAGGGCTGCTAGCGTCGGGTTCGACTGTGGTGGTTCTCTCGAGATTTGAAATGGACGAAATGCTCTCTGCTATTTCCAACTATCGCGTAACATACTTGCCTGTGGTGCCGCCGGTACTCGTTGCACTCATTAATAAAGCTGATAAAATTCAGGCGAGATATAATTTGGGGTCGTTGCAGGCTGTTTTATCAGGTGGGGCCCCATTGAGTAAGGAACTGATCAAGGGGTTCTTGACGCTGTATCCTAAGATCAAGATTCTTCAAGGGTATGCGTTGACGGAAACAACAGGATTAGGTTCCTCAACCGACACATTAGAGGAGAGCATGCGGTACGGTACGGCCGGGTTTCTAGCTGCCTCCCTTGATGCAAAAATCATCGATACGGAGACTGGAAAGGCCTTGCCGGTTAATCGGACTGGCGAACTTTGGGTACGCGGCCCTTCCGTCATGAAAGGTTATTTAAACAACCCTGAAGCGACTGCAGCAACTTTAGATTCTGATGGGTGGTTAAGAACTGGTGATCTTTGCTACATTGACGATGATGGTTACATCTTCATCGTTGATAGATTGAAGGAGCTGATCAAATACAAGGGCTATCAGGTCCCTCCTGCGGAACTAGAGGCACTGTTGCTTACTCATCCGGAAATTGCAGATGCTGCAGTCATACCATTCCCGGATAAGGAGGTTGGACAGTTTCCCATGGCTTATGTGGTAAGAAAAGTAGGAAGTAATTTGACGGAGAATGCAATCATGGGCATAGTTGCAAGACAGGTGGCTCCATACAAGAGAATCCGACGAGTTGCATTTGTGGATGCCATCCCCAAAAATCCAACTGGCAAGATTCTTAGGAAGGATCTCATTAAGCTTGCGACCTCCAAGCTCTAA 1647 0.473 MGHDRMWIDPKSGFCESNSIFYSKRKPLLLPSNEYLDITTFISSHVHHGKIAFIDASTGRHLTYKQLWRAVDSVTTCLSEMGICKGHVVLVLSPNSIFFPIICFSVLTLGAIVTTTNPLNTPHEIGIQIADSKPILAFTTQFLLSKLAGTEIPIVLIGEHDNSASNTRIVSSLEDMMKKEPSQSRIKERVSQDDLATLLYSSGTTGRSKGVMSSHRSLIVMVQNVMSRIQSENGAQTVLSTVPMFHLYGFAWFVIGLLASGSTVVVLSRFEMDEMLSAISNYRVTYLPVVPPVLVALINKADKIQARYNLGSLQAVLSGGAPLSKELIKGFLTLYPKIKILQGYALTETTGLGSSTDTLEESMRYGTAGFLAASLDAKIIDTETGKALPVNRTGELWVRGPSVMKGYLNNPEATAATLDSDGWLRTGDLCYIDDDGYIFIVDRLKELIKYKGYQVPPAELEALLLTHPEIADAAVIPFPDKEVGQFPMAYVVRKVGSNLTENAIMGIVARQVAPYKRIRRVAFVDAIPKNPTGKILRKDLIKLATSKL* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl03g02360 548 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
Eupl03g02360 548 SUPERFAMILY Acetyl-CoA synthetase-like 45 546 - -
Eupl03g02360 548 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 445 - -
Eupl03g02360 548 Gene3D - 446 547 IPR045851 -
Eupl03g02360 548 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Eupl03g02360 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 542 - -
Eupl03g02360 548 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Eupl03g02360 548 Gene3D - 19 445 IPR042099 -
Eupl03g02360 548 CDD 4CL 30 540 - -
Eupl03g02360 548 Pfam AMP-binding enzyme 46 450 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl03g02360 Eupl-Chr3 54843852 54847740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl03g02360 6 548 Monolignol Biosynthesis Gene Families AT1G20480 57.455 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl03g02360 K10526 - ming:122064688 819.69